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    Results: 1 to 20 of 718

    1.

    YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.

    Schwarz R, Musch P, von Kamp A, Engels B, Schirmer H, Schuster S, Dandekar T.

    BMC Bioinformatics. 2005 Jun 1;6:135.PMID: 15929789 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.

    Klamt S, Stelling J, Ginkel M, Gilles ED.

    Bioinformatics. 2003 Jan 22;19(2):261-9.PMID: 12538248 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.

    Weniger M, Engelmann JC, Schultz J.

    BMC Bioinformatics. 2007 Jun 2;8:179.PMID: 17543125 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Integrated network reconstruction, visualization and analysis using YANAsquare.

    Schwarz R, Liang C, Kaleta C, Kühnel M, Hoffmann E, Kuznetsov S, Hecker M, Griffiths G, Schuster S, Dandekar T.

    BMC Bioinformatics. 2007 Aug 28;8:313.PMID: 17725829 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Integration of metabolic networks and gene expression in virtual reality.

    Yang Y, Engin L, Wurtele ES, Cruz-Neira C, Dickerson JA.

    Bioinformatics. 2005 Sep 15;21(18):3645-50. Epub 2005 Jul 14.PMID: 16020466 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    MILANO--custom annotation of microarray results using automatic literature searches.

    Rubinstein R, Simon I.

    BMC Bioinformatics. 2005 Jan 20;6:12.PMID: 15661078 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

    Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

    BMC Bioinformatics. 2005 Apr 6;6:86.PMID: 15813968 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution.

    Cai JJ, Smith DK, Xia X, Yuen KY.

    BMC Bioinformatics. 2005 Mar 22;6:64.PMID: 15780146 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    CAGER: classification analysis of gene expression regulation using multiple information sources.

    Ruan J, Zhang W.

    BMC Bioinformatics. 2005 May 12;6:114.PMID: 15890068 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    METATOOL: for studying metabolic networks.

    Pfeiffer T, Sánchez-Valdenebro I, Nuño JC, Montero F, Schuster S.

    Bioinformatics. 1999 Mar;15(3):251-7.PMID: 10222413 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    InterferenceAnalyzer: tools for the analysis and simulation of multi-locus genetic data.

    Viswanath L, Housworth EA.

    BMC Bioinformatics. 2005 Dec 12;6:297.PMID: 16343334 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    SNA--a toolbox for the stoichiometric analysis of metabolic networks.

    Urbanczik R.

    BMC Bioinformatics. 2006 Mar 13;7:129.PMID: 16533403 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    DEEP--a tool for differential expression effector prediction.

    Degenhardt J, Haubrock M, Dönitz J, Wingender E, Crass T.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W619-24. Epub 2007 Jun 21.PMID: 17584786 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

    Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

    BMC Bioinformatics. 2009 Feb 3;10:48.PMID: 19192299 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Computation of elementary modes: a unifying framework and the new binary approach.

    Gagneur J, Klamt S.

    BMC Bioinformatics. 2004 Nov 4;5:175.PMID: 15527509 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    MetaPath Online: a web server implementation of the network expansion algorithm.

    Handorf T, Ebenhöh O.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W613-8. Epub 2007 May 5.PMID: 17483511 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    bioNMF: a versatile tool for non-negative matrix factorization in biology.

    Pascual-Montano A, Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Marqui RD.

    BMC Bioinformatics. 2006 Jul 28;7:366.PMID: 16875499 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    WebArray: an online platform for microarray data analysis.

    Xia X, McClelland M, Wang Y.

    BMC Bioinformatics. 2005 Dec 21;6:306.PMID: 16371165 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.

    Xiang Z, Qin ZS, He Y.

    Bioinformatics. 2007 Jul 15;23(14):1843-5. Epub 2007 May 7.PMID: 17485426 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    JCell--a Java-based framework for inferring regulatory networks from time series data.

    Spieth C, Supper J, Streichert F, Speer N, Zell A.

    Bioinformatics. 2006 Aug 15;22(16):2051-2. Epub 2006 Jun 16.PMID: 16782725 [PubMed - indexed for MEDLINE]Related articlesFree article

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