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    Results: 1 to 20 of 139

    1.

    The Sequence Ontology: a tool for the unification of genome annotations.

    Eilbeck K, Lewis SE, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M.

    Genome Biol. 2005;6(5):R44. Epub 2005 Apr 29.

    PMID:
    15892872
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The Protein Feature Ontology: a tool for the unification of protein feature annotations.

    Reeves GA, Eilbeck K, Magrane M, O'Donovan C, Montecchi-Palazzi L, Harris MA, Orchard S, Jimenez RC, Prlic A, Hubbard TJ, Hermjakob H, Thornton JM.

    Bioinformatics. 2008 Dec 1;24(23):2767-72. Epub 2008 Oct 20.

    PMID:
    18936051
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Additional gene ontology structure for improved biological reasoning.

    Myhre S, Tveit H, Mollestad T, Laegreid A.

    Bioinformatics. 2006 Aug 15;22(16):2020-7. Epub 2006 Jun 20.

    PMID:
    16787968
    [PubMed - indexed for MEDLINE]
    Free Article
    4.

    Gene Ontology annotations: what they mean and where they come from.

    Hill DP, Smith B, McAndrews-Hill MS, Blake JA.

    BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S2.

    PMID:
    18460184
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    A relation based measure of semantic similarity for Gene Ontology annotations.

    Sheehan B, Quigley A, Gaudin B, Dobson S.

    BMC Bioinformatics. 2008 Nov 4;9:468.

    PMID:
    18983678
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Methods for gene ontology annotation.

    Dimmer E, Berardini TZ, Barrell D, Camon E.

    Methods Mol Biol. 2007;406:495-520.

    PMID:
    18287709
    [PubMed - indexed for MEDLINE]
    7.

    xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.

    Schlueter SD, Wilkerson MD, Dong Q, Brendel V.

    Genome Biol. 2006;7(11):R111.

    PMID:
    17116260
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.

    Teber ET, Crawford E, Bolton KB, Van Dyk D, Schofield PR, Kapoor V, Church WB.

    BMC Bioinformatics. 2006 Jan 23;7:33.

    PMID:
    16426464
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.

    Bhasi A, Pandey RV, Utharasamy SP, Senapathy P.

    Bioinformatics. 2007 Jul 15;23(14):1815-23. Epub 2007 Mar 7.

    PMID:
    17344236
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    Improvements to cardiovascular gene ontology.

    Lovering RC, Dimmer EC, Talmud PJ.

    Atherosclerosis. 2009 Jul;205(1):9-14. Epub 2008 Nov 1. Review.

    PMID:
    19046747
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.

    Smith CL, Goldsmith CA, Eppig JT.

    Genome Biol. 2005;6(1):R7. Epub 2004 Dec 15.

    PMID:
    15642099
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    EGASP: the human ENCODE Genome Annotation Assessment Project.

    Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

    Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

    PMID:
    16925836
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary.

    Mao X, Cai T, Olyarchuk JG, Wei L.

    Bioinformatics. 2005 Oct 1;21(19):3787-93. Epub 2005 Apr 7.

    PMID:
    15817693
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Gene Ontology annotations at SGD: new data sources and annotation methods.

    Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. Epub 2007 Nov 3.

    PMID:
    17982175
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences.

    D'Ascenzo MD, Collmer A, Martin GB.

    Nucleic Acids Res. 2004 Jun 7;32(10):3124-35. Print 2004.

    PMID:
    15184545
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species.

    Reference Genome Group of the Gene Ontology Consortium.

    PLoS Comput Biol. 2009 Jul;5(7):e1000431. Epub 2009 Jul 3.

    PMID:
    19578431
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Discovering gene annotations in biomedical text databases.

    Cakmak A, Ozsoyoglu G.

    BMC Bioinformatics. 2008 Mar 6;9:143.

    PMID:
    18325104
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

    Black DL.

    Cell. 2000 Oct 27;103(3):367-70. Review. No abstract available.

    PMID:
    11081623
    [PubMed - indexed for MEDLINE]
    19.

    High-throughput functional annotation and data mining with the Blast2GO suite.

    Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talón M, Dopazo J, Conesa A.

    Nucleic Acids Res. 2008 Jun;36(10):3420-35. Epub 2008 Apr 29.

    PMID:
    18445632
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Sequence ontology annotation guide.

    Eilbeck K, Lewis SE.

    Comp Funct Genomics. 2004;5(8):642-7.

    PMID:
    18629179
    [PubMed]
    Free PMC Article

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