PubMed

The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context.

Song J, Bonner CA, Wolinsky M, Jensen RA.

BMC Biol. 2005 May 12;3:13.PMID: 15888209 [PubMed - indexed for MEDLINE]Related articlesFree article

Cyclohexadienyl dehydrogenase from Pseudomonas stutzeri exemplifies a widespread type of tyrosine-pathway dehydrogenase in the TyrA protein family.

Xie G, Bonner CA, Jensen RA.

Comp Biochem Physiol C Toxicol Pharmacol. 2000 Jan;125(1):65-83.PMID: 11790331 [PubMed - indexed for MEDLINE]Related articles

A core catalytic domain of the TyrA protein family: arogenate dehydrogenase from Synechocystis.

Bonner CA, Jensen RA, Gander JE, Keyhani NO.

Biochem J. 2004 Aug 15;382(Pt 1):279-91.PMID: 15171683 [PubMed - indexed for MEDLINE]Related articlesFree article

Cohesion group approach for evolutionary analysis of TyrA, a protein family with wide-ranging substrate specificities.

Bonner CA, Disz T, Hwang K, Song J, Vonstein V, Overbeek R, Jensen RA.

Microbiol Mol Biol Rev. 2008 Mar;72(1):13-53, table of contents. Review.PMID: 18322033 [PubMed - indexed for MEDLINE]Related articlesFree article

A monofunctional prephenate dehydrogenase created by cleavage of the 5' 109 bp of the tyrA gene from Erwinia herbicola.

Xia T, Zhao G, Fischer RS, Jensen RA.

J Gen Microbiol. 1992 Jul;138(7):1309-16.PMID: 1512561 [PubMed - indexed for MEDLINE]Related articlesFree article

Mixed-function supraoperons that exhibit overall conservation, albeit shuffled gene organization, across wide intergenomic distances within eubacteria.

Xie G, Brettin TS, Bonner CA, Jensen RA.

Microb Comp Genomics. 1999;4(1):5-28. Review.PMID: 10518299 [PubMed - indexed for MEDLINE]Related articles

The pheA/tyrA/aroF region from Erwinia herbicola: an emerging comparative basis for analysis of gene organization and regulation in enteric bacteria.

Xia T, Zhao G, Jensen RA.

J Mol Evol. 1993 Feb;36(2):107-20.PMID: 8094464 [PubMed - indexed for MEDLINE]Related articles

Diversity and evolution of the small multidrug resistance protein family.

Bay DC, Turner RJ.

BMC Evol Biol. 2009 Jun 23;9:140.PMID: 19549332 [PubMed - indexed for MEDLINE]Related articlesFree article

Feedback inhibition of chorismate mutase/prephenate dehydrogenase (TyrA) of Escherichia coli: generation and characterization of tyrosine-insensitive mutants.

Lütke-Eversloh T, Stephanopoulos G.

Appl Environ Microbiol. 2005 Nov;71(11):7224-8.PMID: 16269762 [PubMed - indexed for MEDLINE]Related articlesFree article

The phylogenetic origin of the bifunctional tyrosine-pathway protein in the enteric lineage of bacteria.

Ahmad S, Jensen RA.

Mol Biol Evol. 1988 May;5(3):282-97.PMID: 3386529 [PubMed - indexed for MEDLINE]Related articles

Phylogenetic analysis of bacterial and archaeal arsC gene sequences suggests an ancient, common origin for arsenate reductase.

Jackson CR, Dugas SL.

BMC Evol Biol. 2003 Jul 23;3:18. Epub 2003 Jul 23.PMID: 12877744 [PubMed - indexed for MEDLINE]Related articlesFree article

A probable mixed-function supraoperon in Pseudomonas exhibits gene organization features of both intergenomic conservation and gene shuffling.

Xie G, Bonner CA, Jensen RA.

J Mol Evol. 1999 Jul;49(1):108-21. Erratum in: J Mol Evol 2000 Feb;50(2):202. PMID: 10368439 [PubMed - indexed for MEDLINE]Related articles

On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes.

Fondi M, Brilli M, Fani R.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S12.PMID: 17430556 [PubMed - indexed for MEDLINE]Related articlesFree article

Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy.

Xie G, Bonner CA, Song J, Keyhani NO, Jensen RA.

BMC Biol. 2004 Jun 23;2:15.PMID: 15214963 [PubMed - indexed for MEDLINE]Related articlesFree article

Bioinformatic analysis of an unusual gene-enzyme relationship in the arginine biosynthetic pathway among marine gamma proteobacteria: implications concerning the formation of N-acetylated intermediates in prokaryotes.

Xu Y, Glansdorff N, Labedan B.

BMC Genomics. 2006 Jan 12;7:4.PMID: 16409639 [PubMed - indexed for MEDLINE]Related articlesFree article

The rhomboids: a nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers.

Koonin EV, Makarova KS, Rogozin IB, Davidovic L, Letellier MC, Pellegrini L.

Genome Biol. 2003;4(3):R19. Epub 2003 Feb 28.PMID: 12620104 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif.

Bürglin TR.

BMC Genomics. 2008 Mar 11;9:127.PMID: 18334026 [PubMed - indexed for MEDLINE]Related articlesFree article

The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes.

Gupta RS.

FEMS Microbiol Rev. 2000 Oct;24(4):367-402. Review.PMID: 10978543 [PubMed - indexed for MEDLINE]Related articles

The origin and evolution of eucaryal HIS7 genes: from metabolon to bifunctional proteins?

Brilli M, Fani R.

Gene. 2004 Sep 15;339:149-60.PMID: 15363855 [PubMed - indexed for MEDLINE]Related articles

Diversity, taxonomy and evolution of medium-chain dehydrogenase/reductase superfamily.

Riveros-Rosas H, Julián-Sánchez A, Villalobos-Molina R, Pardo JP, Piña E.

Eur J Biochem. 2003 Aug;270(16):3309-34.PMID: 12899689 [PubMed - indexed for MEDLINE]Related articlesFree article