PubMed

Integration of the Gene Ontology into an object-oriented architecture.

Shegogue D, Zheng WJ.

BMC Bioinformatics. 2005 May 10;6:113.PMID: 15885145 [PubMed - indexed for MEDLINE]Related articlesFree article

An object-oriented programming system for the integration of internet-based bioinformatics resources.

Beveridge A.

Appl Bioinformatics. 2006;5(1):29-39.PMID: 16539535 [PubMed - indexed for MEDLINE]Related articles

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.PMID: 15723693 [PubMed - indexed for MEDLINE]Related articlesFree article

GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments.

Kirov SA, Peng X, Baker E, Schmoyer D, Zhang B, Snoddy J.

BMC Bioinformatics. 2005 Mar 24;6:72.PMID: 15790402 [PubMed - indexed for MEDLINE]Related articlesFree article

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.

Boyle EI, Weng S, Gollub J, Jin H, Botstein D, Cherry JM, Sherlock G.

Bioinformatics. 2004 Dec 12;20(18):3710-5. Epub 2004 Aug 5.PMID: 15297299 [PubMed - indexed for MEDLINE]Related articlesFree article

Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases.

Srdanovic M, Schenk U, Schwieger M, Campagne F.

BMC Bioinformatics. 2005 Jan 10;6:5.PMID: 15642112 [PubMed - indexed for MEDLINE]Related articlesFree article

ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.

Stocker G, Rieder D, Trajanoski Z.

Bioinformatics. 2004 Mar 22;20(5):805-7. Epub 2004 Jan 29.PMID: 14751976 [PubMed - indexed for MEDLINE]Related articlesFree article

Wildfire: distributed, Grid-enabled workflow construction and execution.

Tang F, Chua CL, Ho LY, Lim YP, Issac P, Krishnan A.

BMC Bioinformatics. 2005 Mar 24;6:69.PMID: 15788106 [PubMed - indexed for MEDLINE]Related articlesFree article

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.PMID: 15801979 [PubMed - indexed for MEDLINE]Related articlesFree article

BIAS: Bioinformatics Integrated Application Software.

Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z.

Bioinformatics. 2005 Apr 15;21(8):1745-6. Epub 2004 Nov 30.PMID: 15572471 [PubMed - indexed for MEDLINE]Related articlesFree article

PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.

Demir E, Babur O, Dogrusoz U, Gursoy A, Nisanci G, Cetin-Atalay R, Ozturk M.

Bioinformatics. 2002 Jul;18(7):996-1003.PMID: 12117798 [PubMed - indexed for MEDLINE]Related articlesFree article

BIOZON: a system for unification, management and analysis of heterogeneous biological data.

Birkland A, Yona G.

BMC Bioinformatics. 2006 Feb 15;7:70.PMID: 16480510 [PubMed - indexed for MEDLINE]Related articlesFree article

MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution.

Cai JJ, Smith DK, Xia X, Yuen KY.

BMC Bioinformatics. 2005 Mar 22;6:64.PMID: 15780146 [PubMed - indexed for MEDLINE]Related articlesFree article

Developing a modern web interface for database-driven bioinformatics tools.

Khandheria P, Garner HR.

IEEE Eng Med Biol Mag. 2007 Mar-Apr;26(2):96-8. No abstract available. PMID: 17441614 [PubMed - indexed for MEDLINE]Related articles

Talisman--rapid application development for the grid.

Oinn TM.

Bioinformatics. 2003;19 Suppl 1:i212-4.PMID: 12855460 [PubMed - indexed for MEDLINE]Related articlesFree article

High performance workflow implementation for protein surface characterization using grid technology.

Merelli I, Morra G, D'Agostino D, Clematis A, Milanesi L.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S19.PMID: 16351745 [PubMed - indexed for MEDLINE]Related articlesFree article

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.PMID: 15686593 [PubMed - indexed for MEDLINE]Related articlesFree article

myGrid: personalised bioinformatics on the information grid.

Stevens RD, Robinson AJ, Goble CA.

Bioinformatics. 2003;19 Suppl 1:i302-4.PMID: 12855473 [PubMed - indexed for MEDLINE]Related articlesFree article

cPath: open source software for collecting, storing, and querying biological pathways.

Cerami EG, Bader GD, Gross BE, Sander C.

BMC Bioinformatics. 2006 Nov 13;7:497.PMID: 17101041 [PubMed - indexed for MEDLINE]Related articlesFree article

SEMEDA: ontology based semantic integration of biological databases.

Köhler J, Philippi S, Lange M.

Bioinformatics. 2003 Dec 12;19(18):2420-7.PMID: 14668226 [PubMed - indexed for MEDLINE]Related articlesFree article