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Building a protein name dictionary from full text: a machine learning term extraction approach.

Shi L, Campagne F.

BMC Bioinformatics. 2005 Apr 7;6:88.PMID: 15817129 [PubMed - indexed for MEDLINE]Related articlesFree article

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.PMID: 14871877 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene name ambiguity of eukaryotic nomenclatures.

Chen L, Liu H, Friedman C.

Bioinformatics. 2005 Jan 15;21(2):248-56. Epub 2004 Aug 27.PMID: 15333458 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene and protein nomenclature in public databases.

Fundel K, Zimmer R.

BMC Bioinformatics. 2006 Aug 9;7:372.PMID: 16899134 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification.

Schuemie MJ, Mons B, Weeber M, Kors JA.

J Biomed Inform. 2007 Jun;40(3):316-24. Epub 2006 Sep 24.PMID: 17079192 [PubMed - indexed for MEDLINE]Related articles

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.PMID: 15383839 [PubMed - indexed for MEDLINE]Related articlesFree article

Using name-internal and contextual features to classify biological terms.

Torii M, Kamboj S, Vijay-Shanker K.

J Biomed Inform. 2004 Dec;37(6):498-511.PMID: 15542022 [PubMed - indexed for MEDLINE]Related articles

Comparison of character-level and part of speech features for name recognition in biomedical texts.

Collier N, Takeuchi K.

J Biomed Inform. 2004 Dec;37(6):423-35.PMID: 15542016 [PubMed - indexed for MEDLINE]Related articles

Playing biology's name game: identifying protein names in scientific text.

Hanisch D, Fluck J, Mevissen HT, Zimmer R.

Pac Symp Biocomput. 2003:403-14.PMID: 12603045 [PubMed - indexed for MEDLINE]Related articlesFree article

iProLINK: an integrated protein resource for literature mining.

Hu ZZ, Mani I, Hermoso V, Liu H, Wu CH.

Comput Biol Chem. 2004 Dec;28(5-6):409-16.PMID: 15556482 [PubMed - indexed for MEDLINE]Related articles

Protein names precisely peeled off free text.

Mika S, Rost B.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i241-7.PMID: 15262805 [PubMed - indexed for MEDLINE]Related articlesFree article

Improving the performance of dictionary-based approaches in protein name recognition.

Tsuruoka Y, Tsujii J.

J Biomed Inform. 2004 Dec;37(6):461-70.PMID: 15542019 [PubMed - indexed for MEDLINE]Related articles

Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts.

Cohen AM, Hersh WR, Dubay C, Spackman K.

BMC Bioinformatics. 2005 Apr 22;6:103.PMID: 15847682 [PubMed - indexed for MEDLINE]Related articlesFree article

Term identification in the biomedical literature.

Krauthammer M, Nenadic G.

J Biomed Inform. 2004 Dec;37(6):512-26.PMID: 15542023 [PubMed - indexed for MEDLINE]Related articles

Distribution of information in biomedical abstracts and full-text publications.

Schuemie MJ, Weeber M, Schijvenaars BJ, van Mulligen EM, van der Eijk CC, Jelier R, Mons B, Kors JA.

Bioinformatics. 2004 Nov 1;20(16):2597-604. Epub 2004 May 6.PMID: 15130936 [PubMed - indexed for MEDLINE]Related articlesFree article

Use of morphological analysis in protein name recognition.

Yamamoto K, Kudo T, Konagaya A, Matsumoto Y.

J Biomed Inform. 2004 Dec;37(6):471-82.PMID: 15542020 [PubMed - indexed for MEDLINE]Related articles

Automatic extraction of gene/protein biological functions from biomedical text.

Koike A, Niwa Y, Takagi T.

Bioinformatics. 2005 Apr 1;21(7):1227-36. Epub 2004 Oct 27.PMID: 15509601 [PubMed - indexed for MEDLINE]Related articlesFree article

BioRAT: extracting biological information from full-length papers.

Corney DP, Buxton BF, Langdon WB, Jones DT.

Bioinformatics. 2004 Nov 22;20(17):3206-13. Epub 2004 Jul 1.PMID: 15231534 [PubMed - indexed for MEDLINE]Related articlesFree article

Extracting synonymous gene and protein terms from biological literature.

Yu H, Agichtein E.

Bioinformatics. 2003;19 Suppl 1:i340-9.PMID: 12855479 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene name identification and normalization using a model organism database.

Morgan AA, Hirschman L, Colosimo M, Yeh AS, Colombe JB.

J Biomed Inform. 2004 Dec;37(6):396-410.PMID: 15542014 [PubMed - indexed for MEDLINE]Related articles