PubMed

BioAfrica's HIV-1 proteomics resource: combining protein data with bioinformatics tools.

Doherty RS, De Oliveira T, Seebregts C, Danaviah S, Gordon M, Cassol S.

Retrovirology. 2005 Mar 9;2:18.PMID: 15757512 [PubMed - indexed for MEDLINE]Related articlesFree article

Human protein reference database as a discovery resource for proteomics.

Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D497-501.PMID: 14681466 [PubMed - indexed for MEDLINE]Related articlesFree article

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.PMID: 17044936 [PubMed - indexed for MEDLINE]Related articlesFree article

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.

Bertone P, Kluger Y, Lan N, Zheng D, Christendat D, Yee A, Edwards AM, Arrowsmith CH, Montelione GT, Gerstein M.

Nucleic Acids Res. 2001 Jul 1;29(13):2884-98.PMID: 11433035 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational proteomics analysis of HIV-1 protease interactome.

Kontijevskis A, Wikberg JE, Komorowski J.

Proteins. 2007 Jul 1;68(1):305-12.PMID: 17427231 [PubMed - indexed for MEDLINE]Related articles

Integration of bioinformatics resources for functional analysis of gene expression and proteomic data.

Huang H, Hu ZZ, Arighi CN, Wu CH.

Front Biosci. 2007 Sep 1;12:5071-88. Review.PMID: 17569631 [PubMed - indexed for MEDLINE]Related articles

The Bioinformatics Links Directory: a compilation of molecular biology web servers.

Fox JA, Butland SL, McMillan S, Campbell G, Ouellette BF.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W3-24.PMID: 15980476 [PubMed - indexed for MEDLINE]Related articlesFree article

A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.

Fox JA, McMillan S, Ouellette BF.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W3-5.PMID: 16845014 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.

Brazas MD, Yamada JT, Ouellette BF.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W3-5. Epub 2009 Jun 15.PMID: 19528072 [PubMed - indexed for MEDLINE]Related articlesFree article

SysPTM: a systematic resource for proteomic research on post-translational modifications.

Li H, Xing X, Ding G, Li Q, Wang C, Xie L, Zeng R, Li Y.

Mol Cell Proteomics. 2009 Aug;8(8):1839-49. Epub 2009 Apr 14.PMID: 19366988 [PubMed - indexed for MEDLINE]Related articles

PRIDE: a public repository of protein and peptide identifications for the proteomics community.

Jones P, Côté RG, Martens L, Quinn AF, Taylor CF, Derache W, Hermjakob H, Apweiler R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D659-63.PMID: 16381953 [PubMed - indexed for MEDLINE]Related articlesFree article

Keeping pace with the data: 2008 update on the Bioinformatics Links Directory.

Brazas MD, Fox JA, Brown T, McMillan S, Ouellette BF.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W2-4.PMID: 18586831 [PubMed - indexed for MEDLINE]Related articlesFree article

Presentation of differentially regulated proteins within a web-accessible proteome database system of microorganisms.

Pleissner KP, Schmelzer P, Wehrl W, Jungblut PR.

Proteomics. 2004 Oct;4(10):2987-90.PMID: 15378751 [PubMed - indexed for MEDLINE]Related articles

SMART 4.0: towards genomic data integration.

Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D142-4.PMID: 14681379 [PubMed - indexed for MEDLINE]Related articlesFree article

The Universal Protein Resource (UniProt) in 2010.

UniProt Consortium.

Nucleic Acids Res. 2010 Jan;38(Database issue):D142-8. Epub 2009 Oct 20.PMID: 19843607 [PubMed - indexed for MEDLINE]Related articlesFree article

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.PMID: 16603075 [PubMed - indexed for MEDLINE]Related articlesFree article

PRIDE: the proteomics identifications database.

Martens L, Hermjakob H, Jones P, Adamski M, Taylor C, States D, Gevaert K, Vandekerckhove J, Apweiler R.

Proteomics. 2005 Aug;5(13):3537-45. Erratum in: Proteomics. 2005 Oct;5(15):4046. PMID: 16041671 [PubMed - indexed for MEDLINE]Related articles

DEPD: a novel database for differentially expressed proteins.

He QY, Cao J, Liu XH, Li MX, Liu YS, Xie JY, Liang SP.

Bioinformatics. 2005 Sep 15;21(18):3694-6. Epub 2005 Jul 14.PMID: 16020467 [PubMed - indexed for MEDLINE]Related articlesFree article

PCHM: A bioinformatic resource for high-throughput human mitochondrial proteome searching and comparison.

Kim T, Kim E, Park SJ, Joo H.

Comput Biol Med. 2009 Aug;39(8):689-96. Epub 2009 Jun 21.PMID: 19541297 [PubMed - indexed for MEDLINE]Related articles

Educational websites--Bioinformatics Tools II.

Lomberk G.

Pancreatology. 2009;9(1-2):4-5. Epub 2008 Dec 12.PMID: 19077448 [PubMed - indexed for MEDLINE]Related articles