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    Results: 1 to 20 of 110

    1.

    Genomic analysis of early murine mammary gland development using novel probe-level algorithms.

    Master SR, Stoddard AJ, Bailey LC, Pan TC, Dugan KD, Chodosh LA.

    Genome Biol. 2005;6(2):R20. Epub 2005 Feb 1.

    PMID:
    15693949
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Computational expression deconvolution in a complex mammalian organ.

    Wang M, Master SR, Chodosh LA.

    BMC Bioinformatics. 2006 Jul 3;7:328.

    PMID:
    16817968
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Identifying significant temporal variation in time course microarray data without replicates.

    Billups SC, Neville MC, Rudolph M, Porter W, Schedin P.

    BMC Bioinformatics. 2009 Mar 26;10:96.

    PMID:
    19323838
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays.

    Auer H, Newsom DL, Nowak NJ, McHugh KM, Singh S, Yu CY, Yang Y, Wenger GD, Gastier-Foster JM, Kornacker K.

    BMC Genomics. 2007 Apr 30;8:111.

    PMID:
    17470268
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Combining mouse mammary gland gene expression and comparative mapping for the identification of candidate genes for QTL of milk production traits in cattle.

    Ron M, Israeli G, Seroussi E, Weller JI, Gregg JP, Shani M, Medrano JF.

    BMC Genomics. 2007 Jun 20;8:183.

    PMID:
    17584498
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    A high performance test of differential gene expression for oligonucleotide arrays.

    Lemon WJ, Liyanarachchi S, You M.

    Genome Biol. 2003;4(10):R67. Epub 2003 Sep 10.

    PMID:
    14519202
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Identification of differentially expressed microRNAs during the development of Chinese murine mammary gland.

    Wang C, Li Q.

    J Genet Genomics. 2007 Nov;34(11):966-73.

    PMID:
    18037133
    [PubMed - indexed for MEDLINE]
    8.

    Integrating probe-level expression changes across generations of Affymetrix arrays.

    Elo LL, Lahti L, Skottman H, Kyläniemi M, Lahesmaa R, Aittokallio T.

    Nucleic Acids Res. 2005 Dec 14;33(22):e193.

    PMID:
    16356924
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Probe-level measurement error improves accuracy in detecting differential gene expression.

    Liu X, Milo M, Lawrence ND, Rattray M.

    Bioinformatics. 2006 Sep 1;22(17):2107-13. Epub 2006 Jul 4.

    PMID:
    16820429
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    Gene expression profiling of early involuting mammary gland reveals novel genes potentially relevant to human breast cancer.

    Blanchard A, Shiu R, Booth S, Sorensen G, DeCorby N, Nistor A, Wong P, Leygue E, Myal Y.

    Front Biosci. 2007 Jan 1;12:2221-32.

    PMID:
    17127459
    [PubMed - indexed for MEDLINE]
    11.

    Effects of filtering by Present call on analysis of microarray experiments.

    McClintick JN, Edenberg HJ.

    BMC Bioinformatics. 2006 Jan 31;7:49.

    PMID:
    16448562
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Filtering genes to improve sensitivity in oligonucleotide microarray data analysis.

    Calza S, Raffelsberger W, Ploner A, Sahel J, Leveillard T, Pawitan Y.

    Nucleic Acids Res. 2007;35(16):e102. Epub 2007 Aug 15.

    PMID:
    17702762
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    The effects of probe binding affinity differences on gene expression measurements and how to deal with them.

    Dannemann M, Lorenc A, Hellmann I, Khaitovich P, Lachmann M.

    Bioinformatics. 2009 Nov 1;25(21):2772-9. Epub 2009 Aug 18.

    PMID:
    19689957
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Robust detection and genotyping of single feature polymorphisms from gene expression data.

    Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z.

    PLoS Comput Biol. 2009 Mar;5(3):e1000317. Epub 2009 Mar 13.

    PMID:
    19282978
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Improving gene set analysis of microarray data by SAM-GS.

    Dinu I, Potter JD, Mueller T, Liu Q, Adewale AJ, Jhangri GS, Einecke G, Famulski KS, Halloran P, Yasui Y.

    BMC Bioinformatics. 2007 Jul 5;8:242.

    PMID:
    17612399
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    [Preparation and analysis of oligonucleotide microarray for expression detection of mouse cytokine-associated gene].

    Huang J, Chen SH, Tong L, Guan W, Ding Y, Liang H, Li WJ, Wang SQ.

    Sheng Wu Gong Cheng Xue Bao. 2002 Jul;18(4):501-4. Chinese.

    PMID:
    12385252
    [PubMed - indexed for MEDLINE]
    18.

    Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis.

    Li RW, Meyer MJ, Van Tassell CP, Sonstegard TS, Connor EE, Van Amburgh ME, Boisclair YR, Capuco AV.

    Physiol Genomics. 2006 Oct 3;27(1):42-53. Epub 2006 Jun 20.

    PMID:
    16788005
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    Evaluation of methods for oligonucleotide array data via quantitative real-time PCR.

    Qin LX, Beyer RP, Hudson FN, Linford NJ, Morris DE, Kerr KF.

    BMC Bioinformatics. 2006 Jan 17;7:23.

    PMID:
    16417622
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Effects of increased milking frequency on gene expression in the bovine mammary gland.

    Connor EE, Siferd S, Elsasser TH, Evock-Clover CM, Van Tassell CP, Sonstegard TS, Fernandes VM, Capuco AV.

    BMC Genomics. 2008 Jul 31;9:362.

    PMID:
    18671851
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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