Warning: The NCBI web site requires JavaScript to function. more...
Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach.
Elemento O, Tavazoie S.
Genome Biol. 2005;6(2):R18. Epub 2005 Jan 26.
Related citations
Eukaryotic regulatory element conservation analysis and identification using comparative genomics.
Liu Y, Liu XS, Wei L, Altman RB, Batzoglou S.
Genome Res. 2004 Mar;14(3):451-8.
Discovery of regulatory elements in vertebrates through comparative genomics.
Prakash A, Tompa M.
Nat Biotechnol. 2005 Oct;23(10):1249-56.
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D.
Genome Res. 2005 Aug;15(8):1034-50. Epub 2005 Jul 15.
Comparative genomics using fugu: a tool for the identification of conserved vertebrate cis-regulatory elements.
Venkatesh B, Yap WH.
Bioessays. 2005 Jan;27(1):100-7. Review.
Revealing posttranscriptional regulatory elements through network-level conservation.
Chan CS, Elemento O, Tavazoie S.
PLoS Comput Biol. 2005 Dec;1(7):e69. Epub 2005 Dec 9.
The truth about mouse, human, worms and yeast.
Nelson DR, Nebert DW.
Hum Genomics. 2004 Jan;1(2):146-9.
Comparative genomics using Fugu reveals insights into regulatory subfunctionalization.
Woolfe A, Elgar G.
Genome Biol. 2007;8(4):R53.
A steganalysis-based approach to comprehensive identification and characterization of functional regulatory elements.
Wang G, Zhang W.
Genome Biol. 2006;7(6):R49.
CoMoDis: composite motif discovery in mammalian genomes.
Donaldson IJ, Göttgens B.
Nucleic Acids Res. 2007;35(1):e1. Epub 2006 Nov 27.
Cracking the genome's second code: enhancer detection by combined phylogenetic footprinting and transgenic fish and frog embryos.
Allende ML, Manzanares M, Tena JJ, Feijóo CG, Gómez-Skarmeta JL.
Methods. 2006 Jul;39(3):212-9.
Identifying pattern-defined regulatory islands in mammalian genomes.
Cheung TH, Barthel KK, Kwan YL, Liu X.
Proc Natl Acad Sci U S A. 2007 Jun 12;104(24):10116-21. Epub 2007 May 29.
Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend.
McGaughey DM, Stine ZE, Huynh JL, Vinton RM, McCallion AS.
BMC Genomics. 2009 Jan 7;10:8.
Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.
Yavatkar AS, Lin Y, Ross J, Fann Y, Brody T, Odenwald WF.
BMC Genomics. 2008 Feb 28;9:106.
NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.
Rambaldi D, Guffanti A, Morandi P, Cassata G.
BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S22.
Caenorhabditis elegans cisRED: a catalogue of conserved genomic elements.
Sleumer MC, Bilenky M, He A, Robertson G, Thiessen N, Jones SJ.
Nucleic Acids Res. 2009 Mar;37(4):1323-34. Epub 2009 Jan 16.
TFBScluster web server for the identification of mammalian composite regulatory elements.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W524-8.
A model of the statistical power of comparative genome sequence analysis.
Eddy SR.
PLoS Biol. 2005 Jan;3(1):e10. Epub 2005 Jan 4.
Phylogeny based discovery of regulatory elements.
Gertz J, Fay JC, Cohen BA.
BMC Bioinformatics. 2006 May 22;7:266.
Intronic alternative splicing regulators identified by comparative genomics in nematodes.
Kabat JL, Barberan-Soler S, McKenna P, Clawson H, Farrer T, Zahler AM.
PLoS Comput Biol. 2006 Jul 14;2(7):e86. Epub 2006 Jun 5.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on