PubMed

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.PMID: 15661078 [PubMed - indexed for MEDLINE]Related articlesFree article

CoPub Mapper: mining MEDLINE based on search term co-publication.

Alako BT, Veldhoven A, van Baal S, Jelier R, Verhoeven S, Rullmann T, Polman J, Jenster G.

BMC Bioinformatics. 2005 Mar 11;6:51.PMID: 15760478 [PubMed - indexed for MEDLINE]Related articlesFree article

PubMatrix: a tool for multiplex literature mining.

Becker KG, Hosack DA, Dennis G Jr, Lempicki RA, Bright TJ, Cheadle C, Engel J.

BMC Bioinformatics. 2003 Dec 10;4:61.PMID: 14667255 [PubMed - indexed for MEDLINE]Related articlesFree article

PSE: a tool for browsing a large amount of MEDLINE/PubMed abstracts with gene names and common words as the keywords.

Yoneya T.

BMC Bioinformatics. 2005 Dec 10;6:295.PMID: 16336692 [PubMed - indexed for MEDLINE]Related articlesFree article

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48.PMID: 19192299 [PubMed - indexed for MEDLINE]Related articlesFree article

MARS: microarray analysis, retrieval, and storage system.

Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z.

BMC Bioinformatics. 2005 Apr 18;6:101.PMID: 15836795 [PubMed - indexed for MEDLINE]Related articlesFree article

Onto-Tools: new additions and improvements in 2006.

Khatri P, Voichita C, Kattan K, Ansari N, Khatri A, Georgescu C, Tarca AL, Draghici S.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W206-11. Epub 2007 Jun 21.PMID: 17584796 [PubMed - indexed for MEDLINE]Related articlesFree article

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.PMID: 17980028 [PubMed - indexed for MEDLINE]Related articlesFree article

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.PMID: 17062145 [PubMed - indexed for MEDLINE]Related articlesFree article

Biosphere: the interoperation of web services in microarray cluster analysis.

Cheung KH, de Knikker R, Guo Y, Zhong G, Hager J, Yip KY, Kwan AK, Li P, Cheung DW.

Appl Bioinformatics. 2004;3(4):253-6.PMID: 15702956 [PubMed - indexed for MEDLINE]Related articles

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.PMID: 15723693 [PubMed - indexed for MEDLINE]Related articlesFree article

B.E.A.R. GeneInfo: a tool for identifying gene-related biomedical publications through user modifiable queries.

Zhou G, Wen X, Liu H, Schlicht MJ, Hessner MJ, Tonellato PJ, Datta MW.

BMC Bioinformatics. 2004 Apr 29;5:46.PMID: 15117422 [PubMed - indexed for MEDLINE]Related articlesFree article

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M.

Bioinformatics. 2005 Sep 15;21(18):3674-6. Epub 2005 Aug 4.PMID: 16081474 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayQuest: a web resource for the analysis of DNA microarray data.

Argraves GL, Jani S, Barth JL, Argraves WS.

BMC Bioinformatics. 2005 Dec 1;6:287.PMID: 16321157 [PubMed - indexed for MEDLINE]Related articlesFree article

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.PMID: 17576678 [PubMed - indexed for MEDLINE]Related articlesFree article

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.PMID: 15383839 [PubMed - indexed for MEDLINE]Related articlesFree article

Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts.

Cohen AM, Hersh WR, Dubay C, Spackman K.

BMC Bioinformatics. 2005 Apr 22;6:103.PMID: 15847682 [PubMed - indexed for MEDLINE]Related articlesFree article

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.PMID: 16030072 [PubMed - indexed for MEDLINE]Related articlesFree article

GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining.

Masseroli M, Martucci D, Pinciroli F.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W293-300.PMID: 15215397 [PubMed - indexed for MEDLINE]Related articlesFree article