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    Results: 1 to 20 of 103

    1.

    Construction of predictive promoter models on the example of antibacterial response of human epithelial cells.

    Shelest E, Wingender E.

    Theor Biol Med Model. 2005 Jan 12;2:2.PMID: 15647113 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.

    Li L, Cheng AS, Jin VX, Paik HH, Fan M, Li X, Zhang W, Robarge J, Balch C, Davuluri RV, Kim S, Huang TH, Nephew KP.

    Bioinformatics. 2006 Sep 15;22(18):2210-6. Epub 2006 Jun 29.PMID: 16809387 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Evolutionary conservation of zinc finger transcription factor binding sites in promoters of genes co-expressed with WT1 in prostate cancer.

    Eisermann K, Tandon S, Bazarov A, Brett A, Fraizer G, Piontkivska H.

    BMC Genomics. 2008 Jul 16;9:337.PMID: 18631392 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites.

    Kamalakaran S, Radhakrishnan SK, Beck WT.

    J Biol Chem. 2005 Jun 3;280(22):21491-7. Epub 2005 Mar 24.PMID: 15790569 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human.

    Hatanaka Y, Nagasaki M, Yamaguchi R, Obayashi T, Numata K, Fujita A, Shimamura T, Tamada Y, Imoto S, Kinoshita K, Nakai K, Miyano S.

    Genome Inform. 2008;20:212-21.PMID: 19425135 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Promoter-sharing by different genes in human genome--CPNE1 and RBM12 gene pair as an example.

    Yang W, Ng P, Zhao M, Wong TK, Yiu SM, Lau YL.

    BMC Genomics. 2008 Oct 3;9:456.PMID: 18831769 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Predicting transcription factor synergism.

    Hannenhalli S, Levy S.

    Nucleic Acids Res. 2002 Oct 1;30(19):4278-84.PMID: 12364607 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Transcription factor binding to a putative double E-box motif represses CYP3A4 expression in human lung cells.

    Biggs JS, Wan J, Cutler NS, Hakkola J, Uusimäki P, Raunio H, Yost GS.

    Mol Pharmacol. 2007 Sep;72(3):514-25. Epub 2007 Jun 4.PMID: 17548528 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Comparative promoter region analysis powered by CORG.

    Dieterich C, Grossmann S, Tanzer A, Röpcke S, Arndt PF, Stadler PF, Vingron M.

    BMC Genomics. 2005 Feb 21;6(1):24.PMID: 15723697 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements.

    Hannenhalli SS, Middleton RP, Levy S, Perroud B, Holzwarth JA, McDonald K, Hannah SS.

    Osteoarthritis Cartilage. 2006 Aug;14(8):830-8. Epub 2006 Mar 31.PMID: 16580849 [PubMed - indexed for MEDLINE]Related articles

    11.

    All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues.

    Rozenberg JM, Shlyakhtenko A, Glass K, Rishi V, Myakishev MV, FitzGerald PC, Vinson C.

    BMC Genomics. 2008 Feb 5;9:67.PMID: 18252004 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Functional characterization of the CCL25 promoter in small intestinal epithelial cells suggests a regulatory role for caudal-related homeobox (Cdx) transcription factors.

    Ericsson A, Kotarsky K, Svensson M, Sigvardsson M, Agace W.

    J Immunol. 2006 Mar 15;176(6):3642-51.PMID: 16517733 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    COTRASIF: conservation-aided transcription-factor-binding site finder.

    Tokovenko B, Golda R, Protas O, Obolenskaya M, El'skaya A.

    Nucleic Acids Res. 2009 Apr;37(7):e49. Epub 2009 Mar 5.PMID: 19264796 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    A TNF-induced gene expression program under oscillatory NF-kappaB control.

    Tian B, Nowak DE, Brasier AR.

    BMC Genomics. 2005 Sep 28;6:137.PMID: 16191192 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Inference of transcriptional regulation using gene expression data from the bovine and human genomes.

    Zadissa A, McEwan JC, Brown CM.

    BMC Genomics. 2007 Aug 3;8:265.PMID: 17683551 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Integrating genomic data to predict transcription factor binding.

    Holloway DT, Kon M, DeLisi C.

    Genome Inform. 2005;16(1):83-94.PMID: 16362910 [PubMed - indexed for MEDLINE]Related articles

    17.

    Linking disease-associated genes to regulatory networks via promoter organization.

    Döhr S, Klingenhoff A, Maier H, Hrabé de Angelis M, Werner T, Schneider R.

    Nucleic Acids Res. 2005 Feb 8;33(3):864-72. Print 2005.PMID: 15701758 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.

    Siddharthan R, Siggia ED, van Nimwegen E.

    PLoS Comput Biol. 2005 Dec;1(7):e67. Epub 2005 Dec 9.PMID: 16477324 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Transcriptional regulatory network analysis during epithelial-mesenchymal transformation of retinal pigment epithelium.

    Pratt CH, Vadigepalli R, Chakravarthula P, Gonye GE, Philp NJ, Grunwald GB.

    Mol Vis. 2008 Aug 4;14:1414-28.PMID: 18682805 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome.

    Mahony S, Corcoran DL, Feingold E, Benos PV.

    Genome Biol. 2007;8(5):R84.PMID: 17506886 [PubMed - indexed for MEDLINE]Related articlesFree article

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