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    Results: 1 to 20 of 105

    1.

    Chromatin architecture and gene expression in Escherichia coli.

    Willenbrock H, Ussery DW.

    Genome Biol. 2004;5(12):252. Epub 2004 Dec 1. Review.

    PMID:
    15575978
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    DNA supercoiling, chromatin structure and the regulation of gene expression.

    Higgins CF.

    Antonie Van Leeuwenhoek. 1990 Oct;58(3):155. No abstract available.

    PMID:
    2256674
    [PubMed - indexed for MEDLINE]
    3.

    Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome.

    Blot N, Mavathur R, Geertz M, Travers A, Muskhelishvili G.

    EMBO Rep. 2006 Jul;7(7):710-5. Epub 2006 Jun 16.

    PMID:
    16799466
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.

    Rawal P, Kummarasetti VB, Ravindran J, Kumar N, Halder K, Sharma R, Mukerji M, Das SK, Chowdhury S.

    Genome Res. 2006 May;16(5):644-55.

    PMID:
    16651665
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure.

    Hardy CD, Cozzarelli NR.

    Mol Microbiol. 2005 Sep;57(6):1636-52.

    PMID:
    16135230
    [PubMed - indexed for MEDLINE]
    7.

    Prediction of highly expressed genes in microbes based on chromatin accessibility.

    Willenbrock H, Ussery DW.

    BMC Mol Biol. 2007 Feb 13;8:11.

    PMID:
    17295928
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Dynamic state of DNA topology is essential for genome condensation in bacteria.

    Ohniwa RL, Morikawa K, Kim J, Ohta T, Ishihama A, Wada C, Takeyasu K.

    EMBO J. 2006 Nov 29;25(23):5591-602. Epub 2006 Nov 9.

    PMID:
    17093499
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    DNA supercoiling - a global transcriptional regulator for enterobacterial growth?

    Travers A, Muskhelishvili G.

    Nat Rev Microbiol. 2005 Feb;3(2):157-69. Review.

    PMID:
    15685225
    [PubMed - indexed for MEDLINE]
    10.

    Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays.

    Herring CD, Raffaelle M, Allen TE, Kanin EI, Landick R, Ansari AZ, Palsson BØ.

    J Bacteriol. 2005 Sep;187(17):6166-74.

    PMID:
    16109958
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Bacterial repression loops require enhanced DNA flexibility.

    Becker NA, Kahn JD, Maher LJ 3rd.

    J Mol Biol. 2005 Jun 17;349(4):716-30. Erratum in: J Mol Biol. 2005 Nov 4;353(4):924-6.

    PMID:
    15893770
    [PubMed - indexed for MEDLINE]
    12.

    Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts.

    Cho BK, Knight EM, Barrett CL, Palsson BØ.

    Genome Res. 2008 Jun;18(6):900-10. Epub 2008 Mar 13.

    PMID:
    18340041
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase.

    Oshima T, Ishikawa S, Kurokawa K, Aiba H, Ogasawara N.

    DNA Res. 2006 Aug 31;13(4):141-53. Epub 2006 Oct 17.

    PMID:
    17046956
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Global regulators of transcription in Escherichia coli: mechanisms of action and methods for study.

    Grainger DC, Busby SJ.

    Adv Appl Microbiol. 2008;65:93-113. Review. No abstract available.

    PMID:
    19026863
    [PubMed - indexed for MEDLINE]
    15.

    Coupling the distribution of RNA polymerase to global gene regulation and the dynamic structure of the bacterial nucleoid in Escherichia coli.

    Jin DJ, Cabrera JE.

    J Struct Biol. 2006 Nov;156(2):284-91. Epub 2006 Jul 21. Review.

    PMID:
    16934488
    [PubMed - indexed for MEDLINE]
    16.

    NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility.

    Partridge JD, Bodenmiller DM, Humphrys MS, Spiro S.

    Mol Microbiol. 2009 Aug;73(4):680-94. Epub 2009 Jul 27.

    PMID:
    19656291
    [PubMed - indexed for MEDLINE]
    17.

    SbcCD regulation and localization in Escherichia coli.

    Darmon E, Lopez-Vernaza MA, Helness AC, Borking A, Wilson E, Thacker Z, Wardrope L, Leach DR.

    J Bacteriol. 2007 Sep;189(18):6686-94. Epub 2007 Jul 20.

    PMID:
    17644583
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Negative regulation of DNA repair gene (ung) expression by the CpxR/CpxA two-component system in Escherichia coli K-12 and induction of mutations by increased expression of CpxR.

    Ogasawara H, Teramoto J, Hirao K, Yamamoto K, Ishihama A, Utsumi R.

    J Bacteriol. 2004 Dec;186(24):8317-25.

    PMID:
    15576781
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Defining the growth conditions and promoter-proximal DNA sequences required for activation of gene expression by CreBC in Escherichia coli.

    Cariss SJ, Tayler AE, Avison MB.

    J Bacteriol. 2008 Jun;190(11):3930-9. Epub 2008 Mar 28.

    PMID:
    18375564
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Bacterial DNA topology and infectious disease.

    Dorman CJ, Corcoran CP.

    Nucleic Acids Res. 2009 Feb;37(3):672-8. Epub 2008 Dec 10. Review.

    PMID:
    19073701
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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