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    Results: 1 to 20 of 144

    1.

    Estimating genomic coexpression networks using first-order conditional independence.

    Magwene PM, Kim J.

    Genome Biol. 2004;5(12):R100. Epub 2004 Nov 30.

    PMID:
    15575966
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Using Bayesian networks to analyze expression data.

    Friedman N, Linial M, Nachman I, Pe'er D.

    J Comput Biol. 2000;7(3-4):601-20.

    PMID:
    11108481
    [PubMed - indexed for MEDLINE]
    3.

    Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks.

    Nariai N, Kim S, Imoto S, Miyano S.

    Pac Symp Biocomput. 2004:336-47.

    PMID:
    14992515
    [PubMed - indexed for MEDLINE]
    Free Article
    4.

    Inference of gene pathways using mixture Bayesian networks.

    Ko Y, Zhai C, Rodriguez-Zas S.

    BMC Syst Biol. 2009 May 19;3:54.

    PMID:
    19454027
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.

    Hartemink AJ, Gifford DK, Jaakkola TS, Young RA.

    Pac Symp Biocomput. 2001:422-33.

    PMID:
    11262961
    [PubMed - indexed for MEDLINE]
    Free Article
    6.

    Use of gene networks for identifying and validating drug targets.

    Imoto S, Savoie CJ, Aburatani S, Kim S, Tashiro K, Kuhara S, Miyano S.

    J Bioinform Comput Biol. 2003 Oct;1(3):459-74.

    PMID:
    15290765
    [PubMed - indexed for MEDLINE]
    7.

    Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network.

    Imoto S, Kim S, Goto T, Miyano S, Aburatani S, Tashiro K, Kuhara S.

    J Bioinform Comput Biol. 2003 Jul;1(2):231-52.

    PMID:
    15290771
    [PubMed - indexed for MEDLINE]
    8.

    Extraction of correlated gene clusters by multiple graph comparison.

    Nakaya A, Goto S, Kanehisa M.

    Genome Inform. 2001;12:44-53.

    PMID:
    11791223
    [PubMed - indexed for MEDLINE]
    9.

    Clustering of diverse genomic data using information fusion.

    Kasturi J, Acharya R.

    Bioinformatics. 2005 Feb 15;21(4):423-9. Epub 2004 Dec 17.

    PMID:
    15608052
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    Study of coordinative gene expression at the biological process level.

    Yu T, Sun W, Yuan S, Li KC.

    Bioinformatics. 2005 Sep 15;21(18):3651-7. Epub 2005 Aug 2.

    PMID:
    16076891
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    Decomposing gene expression into cellular processes.

    Segal E, Battle A, Koller D.

    Pac Symp Biocomput. 2003:89-100.

    PMID:
    12603020
    [PubMed - indexed for MEDLINE]
    Free Article
    12.

    Reconstructing genetic networks from time ordered gene expression data using Bayesian method with global search algorithm.

    Wang SC.

    J Bioinform Comput Biol. 2004 Sep;2(3):441-58.

    PMID:
    15359420
    [PubMed - indexed for MEDLINE]
    13.

    Quantitative inference of dynamic regulatory pathways via microarray data.

    Chang WC, Li CW, Chen BS.

    BMC Bioinformatics. 2005 Mar 7;6:44.

    PMID:
    15748298
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Application of Bayesian decomposition for analysing microarray data.

    Moloshok TD, Klevecz RR, Grant JD, Manion FJ, Speier WF 4th, Ochs MF.

    Bioinformatics. 2002 Apr;18(4):566-75.

    PMID:
    12016054
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    Low-order conditional independence graphs for inferring genetic networks.

    Wille A, Bühlmann P.

    Stat Appl Genet Mol Biol. 2006;5:Article1. Epub 2006 Jan 4.

    PMID:
    16646863
    [PubMed - indexed for MEDLINE]
    Free Article
    16.

    Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks.

    Imoto S, Higuchi T, Goto T, Tashiro K, Kuhara S, Miyano S.

    Proc IEEE Comput Soc Bioinform Conf. 2003;2:104-13.

    PMID:
    16452784
    [PubMed - indexed for MEDLINE]
    17.

    Mining coherent dense subgraphs across massive biological networks for functional discovery.

    Hu H, Yan X, Huang Y, Han J, Zhou XJ.

    Bioinformatics. 2005 Jun;21 Suppl 1:i213-21.

    PMID:
    15961460
    [PubMed - indexed for MEDLINE]
    Free Article
    18.

    Modelling gene functional linkages using yeast microarray data.

    Wang T, Xue G, Touchman JW.

    Int J Bioinform Res Appl. 2007;3(2):170-86.

    PMID:
    18048187
    [PubMed - indexed for MEDLINE]
    19.

    Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

    Shimamura T, Imoto S, Yamaguchi R, Miyano S.

    Genome Inform. 2007;19:142-53.

    PMID:
    18546512
    [PubMed - indexed for MEDLINE]
    20.

    The latent process decomposition of cDNA microarray data sets.

    Rogers S, Girolami M, Campbell C, Breitling R.

    IEEE/ACM Trans Comput Biol Bioinform. 2005 Apr-Jun;2(2):143-56.

    PMID:
    17044179
    [PubMed - indexed for MEDLINE]

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