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How biologically relevant are interaction-based modules in protein networks?

Poyatos JF, Hurst LD.

Genome Biol. 2004;5(11):R93. Epub 2004 Nov 1.PMID: 15535869 [PubMed - indexed for MEDLINE]Related articlesFree article

Revealing biological modules via graph summarization.

Navlakha S, Schatz MC, Kingsford C.

J Comput Biol. 2009 Feb;16(2):253-64.PMID: 19183002 [PubMed - indexed for MEDLINE]Related articles

Detecting functional modules in the yeast protein-protein interaction network.

Chen J, Yuan B.

Bioinformatics. 2006 Sep 15;22(18):2283-90. Epub 2006 Jul 12.PMID: 16837529 [PubMed - indexed for MEDLINE]Related articlesFree article

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313.PMID: 18590549 [PubMed - indexed for MEDLINE]Related articlesFree article

Growing functional modules from a seed protein via integration of protein interaction and gene expression data.

Maraziotis IA, Dimitrakopoulou K, Bezerianos A.

BMC Bioinformatics. 2007 Oct 23;8:408.PMID: 17956603 [PubMed - indexed for MEDLINE]Related articlesFree article

The modular organization of domain structures: insights into protein-protein binding.

del Sol A, Carbonell P.

PLoS Comput Biol. 2007 Dec;3(12):e239.PMID: 18069884 [PubMed - indexed for MEDLINE]Related articlesFree article

In search of the biological significance of modular structures in protein networks.

Wang Z, Zhang J.

PLoS Comput Biol. 2007 Jun;3(6):e107. Epub 2007 Apr 30. Erratum in: PLoS Comput Biol. 2007 Jul;3(7):e146. PMID: 17542644 [PubMed - indexed for MEDLINE]Related articlesFree article

Fitting a geometric graph to a protein-protein interaction network.

Higham DJ, Rasajski M, Przulj N.

Bioinformatics. 2008 Apr 15;24(8):1093-9. Epub 2008 Mar 14.PMID: 18344248 [PubMed - indexed for MEDLINE]Related articlesFree article

Modular organization of protein interaction networks.

Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH.

Bioinformatics. 2007 Jan 15;23(2):207-14. Epub 2006 Nov 8. Erratum in: Bioinformatics. 2007 Apr 1;23(7):916. PMID: 17092991 [PubMed - indexed for MEDLINE]Related articlesFree article

Assessing significance of connectivity and conservation in protein interaction networks.

Koyutürk M, Szpankowski W, Grama A.

J Comput Biol. 2007 Jul-Aug;14(6):747-64.PMID: 17691892 [PubMed - indexed for MEDLINE]Related articles

Phylogenetic analysis of modularity in protein interaction networks.

Erten S, Li X, Bebek G, Li J, Koyutürk M.

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Semantic integration to identify overlapping functional modules in protein interaction networks.

Cho YR, Hwang W, Ramanathan M, Zhang A.

BMC Bioinformatics. 2007 Jul 24;8:265.PMID: 17650343 [PubMed - indexed for MEDLINE]Related articlesFree article

Global snapshot of a protein interaction network-a percolation based approach.

Chin CS, Samanta MP.

Bioinformatics. 2003 Dec 12;19(18):2413-9.PMID: 14668225 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparing protein interaction networks via a graph match-and-split algorithm.

Narayanan M, Karp RM.

J Comput Biol. 2007 Sep;14(7):892-907.PMID: 17803369 [PubMed - indexed for MEDLINE]Related articles

Identification of functional modules from conserved ancestral protein-protein interactions.

Dutkowski J, Tiuryn J.

Bioinformatics. 2007 Jul 1;23(13):i149-58.PMID: 17646291 [PubMed - indexed for MEDLINE]Related articlesFree article

A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.

Zhang S, Liu HW, Ning XM, Zhang XS.

Int J Data Min Bioinform. 2009;3(1):68-84.PMID: 19432377 [PubMed - indexed for MEDLINE]Related articles

Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.

Del Mondo G, Eveillard D, Rusu I.

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Identification of conserved protein complexes based on a model of protein network evolution.

Hirsh E, Sharan R.

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Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques.

Ding C, He X, Xiong H, Peng H, Holbrook SR.

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Core and periphery structures in protein interaction networks.

Luo F, Li B, Wan XF, Scheuermann RH.

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