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    Results: 1 to 20 of 119

    1.

    Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria.

    Rodionov DA, Dubchak I, Arkin A, Alm E, Gelfand MS.

    Genome Biol. 2004;5(11):R90. Epub 2004 Oct 22.

    PMID:
    15535866
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?

    Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS.

    Nucleic Acids Res. 2003 Dec 1;31(23):6748-57.

    PMID:
    14627808
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Comparative genomic analysis of T-box regulatory systems in bacteria.

    Vitreschak AG, Mironov AA, Lyubetsky VA, Gelfand MS.

    RNA. 2008 Apr;14(4):717-35.

    PMID:
    18359782
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems.

    Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS.

    Nucleic Acids Res. 2004 Jun 23;32(11):3340-53. Print 2004.

    PMID:
    15215334
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Oxidative stress and heat-shock responses in Desulfovibrio vulgaris by genome-wide transcriptomic analysis.

    Zhang W, Culley DE, Hogan M, Vitiritti L, Brockman FJ.

    Antonie Van Leeuwenhoek. 2006 Jul;90(1):41-55. Epub 2006 May 6.

    PMID:
    16680520
    [PubMed - indexed for MEDLINE]
    6.

    Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks.

    Rodionov DA, Dubchak IL, Arkin AP, Alm EJ, Gelfand MS.

    PLoS Comput Biol. 2005 Oct;1(5):e55. Epub 2005 Oct 28.

    PMID:
    16261196
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.

    Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS.

    BMC Genomics. 2011 Jun 15;12 Suppl 1:S3.

    PMID:
    21810205
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria.

    Rodionov DA, Gelfand MS, Todd JD, Curson AR, Johnston AW.

    PLoS Comput Biol. 2006 Dec 15;2(12):e163. Epub 2006 Oct 18.

    PMID:
    17173478
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms.

    Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS.

    J Biol Chem. 2002 Dec 13;277(50):48949-59. Epub 2002 Oct 9.

    PMID:
    12376536
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum.

    Brune I, Werner H, Hüser AT, Kalinowski J, Pühler A, Tauch A.

    BMC Genomics. 2006 Feb 9;7:21.

    PMID:
    16469103
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Prediction of transcription regulatory sites in Archaea by a comparative genomic approach.

    Gelfand MS, Koonin EV, Mironov AA.

    Nucleic Acids Res. 2000 Feb 1;28(3):695-705.

    PMID:
    10637320
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis.

    Valdés J, Veloso F, Jedlicki E, Holmes D.

    BMC Genomics. 2003 Dec 15;4(1):51.

    PMID:
    14675496
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Genome-assisted analysis of dissimilatory metal-reducing bacteria.

    Fredrickson JK, Romine MF.

    Curr Opin Biotechnol. 2005 Jun;16(3):269-74. Review.

    PMID:
    15961027
    [PubMed - indexed for MEDLINE]
    14.

    NssR, a member of the Crp-Fnr superfamily from Campylobacter jejuni, regulates a nitrosative stress-responsive regulon that includes both a single-domain and a truncated haemoglobin.

    Elvers KT, Turner SM, Wainwright LM, Marsden G, Hinds J, Cole JA, Poole RK, Penn CW, Park SF.

    Mol Microbiol. 2005 Aug;57(3):735-50.

    PMID:
    16045618
    [PubMed - indexed for MEDLINE]
    15.

    Cell envelope stress response in Bacillus licheniformis: integrating comparative genomics, transcriptional profiling, and regulon mining to decipher a complex regulatory network.

    Wecke T, Veith B, Ehrenreich A, Mascher T.

    J Bacteriol. 2006 Nov;188(21):7500-11. Epub 2006 Aug 25.

    PMID:
    16936031
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.

    Rodionov DA, Li X, Rodionova IA, Yang C, Sorci L, Dervyn E, Martynowski D, Zhang H, Gelfand MS, Osterman AL.

    Nucleic Acids Res. 2008 Apr;36(6):2032-46. Epub 2008 Feb 14.

    PMID:
    18276644
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element.

    Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS.

    RNA. 2003 Sep;9(9):1084-97.

    PMID:
    12923257
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Transcriptional regulation of stress response and motility functions in Helicobacter pylori is mediated by HspR and HrcA.

    Roncarati D, Danielli A, Spohn G, Delany I, Scarlato V.

    J Bacteriol. 2007 Oct;189(20):7234-43. Epub 2007 Aug 10.

    PMID:
    17693507
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria.

    Kazakov AE, Rodionov DA, Alm E, Arkin AP, Dubchak I, Gelfand MS.

    J Bacteriol. 2009 Jan;191(1):52-64. Epub 2008 Sep 26.

    PMID:
    18820024
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Comparative genomic analysis of dha regulon and related genes for anaerobic glycerol metabolism in bacteria.

    Sun J, van den Heuvel J, Soucaille P, Qu Y, Zeng AP.

    Biotechnol Prog. 2003 Mar-Apr;19(2):263-72.

    PMID:
    12675558
    [PubMed - indexed for MEDLINE]

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