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    Results: 1 to 20 of 205

    1.

    Improvement of alignment accuracy utilizing sequentially conserved motifs.

    Chakrabarti S, Bhardwaj N, Anand PA, Sowdhamini R.

    BMC Bioinformatics. 2004 Oct 28;5:167.PMID: 15509307 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.

    Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.

    BMC Bioinformatics. 2003 Oct 10;4:47.PMID: 14552658 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    A new progressive-iterative algorithm for multiple structure alignment.

    Lupyan D, Leo-Macias A, Ortiz AR.

    Bioinformatics. 2005 Aug 1;21(15):3255-63. Epub 2005 Jun 7.PMID: 15941743 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    AL2CO: calculation of positional conservation in a protein sequence alignment.

    Pei J, Grishin NV.

    Bioinformatics. 2001 Aug;17(8):700-12.PMID: 11524371 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment.

    Subramanian AR, Weyer-Menkhoff J, Kaufmann M, Morgenstern B.

    BMC Bioinformatics. 2005 Mar 22;6:66.PMID: 15784139 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    MUSTANG: a multiple structural alignment algorithm.

    Konagurthu AS, Whisstock JC, Stuckey PJ, Lesk AM.

    Proteins. 2006 Aug 15;64(3):559-74.PMID: 16736488 [PubMed - indexed for MEDLINE]Related articles

    7.

    PASS2: an automated database of protein alignments organised as structural superfamilies.

    Bhaduri A, Pugalenthi G, Sowdhamini R.

    BMC Bioinformatics. 2004 Apr 2;5:35.PMID: 15059245 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Refining multiple sequence alignments with conserved core regions.

    Chakrabarti S, Lanczycki CJ, Panchenko AR, Przytycka TM, Thiessen PA, Bryant SH.

    Nucleic Acids Res. 2006 May 17;34(9):2598-606. Print 2006.PMID: 16707662 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.

    Thompson JD, Koehl P, Ripp R, Poch O.

    Proteins. 2005 Oct 1;61(1):127-36.PMID: 16044462 [PubMed - indexed for MEDLINE]Related articles

    10.

    ProbCons: Probabilistic consistency-based multiple sequence alignment.

    Do CB, Mahabhashyam MS, Brudno M, Batzoglou S.

    Genome Res. 2005 Feb;15(2):330-40.PMID: 15687296 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs.

    Chakrabarti S, Anand AP, Bhardwaj N, Pugalenthi G, Sowdhamini R.

    Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W274-6.PMID: 15980468 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    State of the art: refinement of multiple sequence alignments.

    Chakrabarti S, Lanczycki CJ, Panchenko AR, Przytycka TM, Thiessen PA, Bryant SH.

    BMC Bioinformatics. 2006 Nov 14;7:499.PMID: 17105653 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Integrated web service for improving alignment quality based on segments comparison.

    Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A.

    BMC Bioinformatics. 2004 Jul 22;5:98.PMID: 15271224 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    PROMALS web server for accurate multiple protein sequence alignments.

    Pei J, Kim BH, Tang M, Grishin NV.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W649-52. Epub 2007 Apr 22.PMID: 17452345 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.

    Via A, Peluso D, Gherardini PF, de Rinaldis E, Colombo T, Ausiello G, Helmer-Citterich M.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W416-9. Epub 2007 May 8.PMID: 17488847 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    MSAT: a multiple sequence alignment tool based on TOPS.

    Ren T, Veeramalai M, Tan AC, Gilbert D.

    Appl Bioinformatics. 2004;3(2-3):149-58.PMID: 15693740 [PubMed - indexed for MEDLINE]Related articles

    17.

    Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.

    La D, Livesay DR.

    BMC Bioinformatics. 2005 May 13;6:116.PMID: 15890082 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence.

    Hickson RE, Simon C, Perrey SW.

    Mol Biol Evol. 2000 Apr;17(4):530-9.PMID: 10742045 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    T-Coffee: A novel method for fast and accurate multiple sequence alignment.

    Notredame C, Higgins DG, Heringa J.

    J Mol Biol. 2000 Sep 8;302(1):205-17.PMID: 10964570 [PubMed - indexed for MEDLINE]Related articles

    20.

    Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels.

    Russell RB, Barton GJ.

    Proteins. 1992 Oct;14(2):309-23.PMID: 1409577 [PubMed - indexed for MEDLINE]Related articles

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