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    Results: 1 to 20 of 106

    1.

    What can we learn from noncoding regions of similarity between genomes?

    Down TA, Hubbard TJ.

    BMC Bioinformatics. 2004 Sep 15;5:131.PMID: 15369604 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Prediction-based approaches to characterize bidirectional promoters in the mammalian genome.

    Yang MQ, Elnitski LL.

    BMC Genomics. 2008;9 Suppl 1:S2.PMID: 18366609 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Enrichment of regulatory signals in conserved non-coding genomic sequence.

    Levy S, Hannenhalli S, Workman C.

    Bioinformatics. 2001 Oct;17(10):871-7.PMID: 11673231 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes.

    Subramanian S, Kumar S.

    Genome Res. 2003 May;13(5):838-44.PMID: 12727904 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay.

    Khambata-Ford S, Liu Y, Gleason C, Dickson M, Altman RB, Batzoglou S, Myers RM.

    Genome Res. 2003 Jul;13(7):1765-74. Epub 2003 Jun 12.PMID: 12805274 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.

    Siddharthan R, Siggia ED, van Nimwegen E.

    PLoS Comput Biol. 2005 Dec;1(7):e67. Epub 2005 Dec 9.PMID: 16477324 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    The sequence of the human genome.

    Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

    Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838. PMID: 11181995 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Improving the specificity of exon prediction using comparative genomics.

    Wu J.

    BMC Genomics. 2008 Sep 16;9 Suppl 2:S13.PMID: 18831778 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes.

    Silva JC, Shabalina SA, Harris DG, Spouge JL, Kondrashovi AS.

    Genet Res. 2003 Aug;82(1):1-18.PMID: 14621267 [PubMed - indexed for MEDLINE]Related articles

    11.

    Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva.

    Guo X, Silva JC.

    BMC Genomics. 2008 Dec 3;9:582.PMID: 19055776 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    CpG island density and its correlations with genomic features in mammalian genomes.

    Han L, Su B, Li WH, Zhao Z.

    Genome Biol. 2008;9(5):R79. Epub 2008 May 13.PMID: 18477403 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Application of machine learning in SNP discovery.

    Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

    BMC Bioinformatics. 2006 Jan 6;7:4.PMID: 16398931 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Close sequence comparisons are sufficient to identify human cis-regulatory elements.

    Prabhakar S, Poulin F, Shoukry M, Afzal V, Rubin EM, Couronne O, Pennacchio LA.

    Genome Res. 2006 Jul;16(7):855-63. Epub 2006 Jun 12.PMID: 16769978 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Tandem repeats in the CpG islands of imprinted genes.

    Hutter B, Helms V, Paulsen M.

    Genomics. 2006 Sep;88(3):323-32. Epub 2006 May 11.PMID: 16690248 [PubMed - indexed for MEDLINE]Related articles

    16.

    Genomic regions with distinct genomic distance conservation in vertebrate genomes.

    Sun H, Skogerbø G, Zheng X, Liu W, Li Y.

    BMC Genomics. 2009 Mar 27;10:133.PMID: 19323843 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Cluster analysis and promoter modelling as bioinformatics tools for the identification of target genes from expression array data.

    Werner T.

    Pharmacogenomics. 2001 Feb;2(1):25-36. Review.PMID: 11258194 [PubMed - indexed for MEDLINE]Related articles

    18.

    Small fitness effect of mutations in highly conserved non-coding regions.

    Kryukov GV, Schmidt S, Sunyaev S.

    Hum Mol Genet. 2005 Aug 1;14(15):2221-9. Epub 2005 Jun 30.PMID: 15994173 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A hybrid neural network system for prediction and recognition of promoter regions in human genome.

    Chen CB, Li T.

    J Zhejiang Univ Sci B. 2005 May;6(5):401-7.PMID: 15822155 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Comprehensive analysis of CpG islands in human chromosomes 21 and 22.

    Takai D, Jones PA.

    Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3740-5. Epub 2002 Mar 12.PMID: 11891299 [PubMed - indexed for MEDLINE]Related articlesFree article

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