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    Results: 1 to 20 of 143

    1.

    Improving identification of differentially expressed genes in microarray studies using information from public databases.

    Kim RD, Park PJ.

    Genome Biol. 2004;5(9):R70. Epub 2004 Aug 26.

    PMID:
    15345054
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    A unified framework for finding differentially expressed genes from microarray experiments.

    Shaik JS, Yeasin M.

    BMC Bioinformatics. 2007 Sep 18;8:347.

    PMID:
    17877806
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

    Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M.

    BMC Bioinformatics. 2006 Dec 19;7:538.

    PMID:
    17177995
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Combining gene expression data from different generations of oligonucleotide arrays.

    Hwang KB, Kong SW, Greenberg SA, Park PJ.

    BMC Bioinformatics. 2004 Oct 25;5:159.

    PMID:
    15504239
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    MAID : an effect size based model for microarray data integration across laboratories and platforms.

    Borozan I, Chen L, Paeper B, Heathcote JE, Edwards AM, Katze M, Zhang Z, McGilvray ID.

    BMC Bioinformatics. 2008 Jul 10;9:305.

    PMID:
    18616827
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Sample size for identifying differentially expressed genes in microarray experiments.

    Wang SJ, Chen JJ.

    J Comput Biol. 2004;11(4):714-26.

    PMID:
    15579240
    [PubMed - indexed for MEDLINE]
    8.

    EVE (external variance estimation) increases statistical power for detecting differentially expressed genes.

    Wille A, Gruissem W, Bühlmann P, Hennig L.

    Plant J. 2007 Nov;52(3):561-9. Epub 2007 Aug 3.

    PMID:
    17680783
    [PubMed - indexed for MEDLINE]
    9.

    Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

    Jeffery IB, Higgins DG, Culhane AC.

    BMC Bioinformatics. 2006 Jul 26;7:359.

    PMID:
    16872483
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Improving the statistical detection of regulated genes from microarray data using intensity-based variance estimation.

    Comander J, Natarajan S, Gimbrone MA Jr, García-Cardeña G.

    BMC Genomics. 2004 Feb 27;5(1):17.

    PMID:
    15113402
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Methods for evaluating gene expression from Affymetrix microarray datasets.

    Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

    BMC Bioinformatics. 2008 Jun 17;9:284.

    PMID:
    18559105
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Reproducibility of differential gene detection across multiple microarray studies.

    Vo TM, Phan JH, Huynh KN, Wang MD.

    Conf Proc IEEE Eng Med Biol Soc. 2007;2007:4231-4.

    PMID:
    18002936
    [PubMed - indexed for MEDLINE]
    14.

    A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments.

    Hong F, Breitling R.

    Bioinformatics. 2008 Feb 1;24(3):374-82. Epub 2008 Jan 18.

    PMID:
    18204063
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data.

    Sartor MA, Leikauf GD, Medvedovic M.

    Bioinformatics. 2009 Jan 15;25(2):211-7. Epub 2008 Nov 27.

    PMID:
    19038984
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Query large scale microarray compendium datasets using a model-based bayesian approach with variable selection.

    Hu M, Qin ZS.

    PLoS One. 2009;4(2):e4495. Epub 2009 Feb 13.

    PMID:
    19214232
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Data-adaptive test statistics for microarray data.

    Mukherjee S, Roberts SJ, van der Laan MJ.

    Bioinformatics. 2005 Sep 1;21 Suppl 2:ii108-14.

    PMID:
    16204088
    [PubMed - indexed for MEDLINE]
    Free Article
    18.

    Unequal group variances in microarray data analyses.

    Demissie M, Mascialino B, Calza S, Pawitan Y.

    Bioinformatics. 2008 May 1;24(9):1168-74. Epub 2008 Mar 14.

    PMID:
    18344518
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach.

    Pan W, Lin J, Le CT.

    Genome Biol. 2002;3(5):research0022. Epub 2002 Apr 22.

    PMID:
    12049663
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    A full Bayesian hierarchical mixture model for the variance of gene differential expression.

    Manda SO, Walls RE, Gilthorpe MS.

    BMC Bioinformatics. 2007 Apr 17;8:124.

    PMID:
    17439644
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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