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Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.

Wang XJ, Reyes JL, Chua NH, Gaasterland T.

Genome Biol. 2004;5(9):R65. Epub 2004 Aug 31.PMID: 15345049 [PubMed - indexed for MEDLINE]Related articlesFree article

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.

German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ.

Nat Biotechnol. 2008 Aug;26(8):941-6. Epub 2008 Jun 9.PMID: 18542052 [PubMed - indexed for MEDLINE]Related articles

Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481.PMID: 18166134 [PubMed - indexed for MEDLINE]Related articlesFree article

Cloning and characterization of microRNAs from rice.

Sunkar R, Girke T, Jain PK, Zhu JK.

Plant Cell. 2005 May;17(5):1397-411. Epub 2005 Apr 1.PMID: 15805478 [PubMed - indexed for MEDLINE]Related articlesFree article

Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes.

Bonnet E, Wuyts J, Rouzé P, Van de Peer Y.

Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11511-6. Epub 2004 Jul 22. Erratum in: Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4655. PMID: 15272084 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational evidence for hundreds of non-conserved plant microRNAs.

Lindow M, Krogh A.

BMC Genomics. 2005 Sep 13;6:119.PMID: 16159385 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.

Jones-Rhoades MW, Bartel DP.

Mol Cell. 2004 Jun 18;14(6):787-99.PMID: 15200956 [PubMed - indexed for MEDLINE]Related articles

Computational prediction of miRNAs in Arabidopsis thaliana.

Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan V.

Genome Res. 2005 Jan;15(1):78-91.PMID: 15632092 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational identification of novel microRNAs and targets in Brassica napus.

Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM.

FEBS Lett. 2007 Apr 3;581(7):1464-74. Epub 2007 Mar 8.PMID: 17367786 [PubMed - indexed for MEDLINE]Related articles

Genome-wide identification of small RNA targets based on target enrichment and microarray hybridizations.

Franco-Zorrilla JM, Del Toro FJ, Godoy M, Pérez-Pérez J, López-Vidriero I, Oliveros JC, García-Casado G, Llave C, Solano R.

Plant J. 2009 Sep;59(5):840-50. Epub 2009 May 2.PMID: 19453461 [PubMed - indexed for MEDLINE]Related articles

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana.

Wang XJ, Gaasterland T, Chua NH.

Genome Biol. 2005;6(4):R30. Epub 2005 Mar 15.PMID: 15833117 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice.

Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M.

BMC Plant Biol. 2008 Dec 2;8:123.PMID: 19055717 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa.

Li Y, Li W, Jin YX.

Acta Biochim Biophys Sin (Shanghai). 2005 Feb;37(2):75-87.PMID: 15685364 [PubMed - indexed for MEDLINE]Related articlesFree article

Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome.

Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ.

Curr Biol. 2008 May 20;18(10):758-62. Epub 2008 May 8.PMID: 18472421 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational prediction of rice (Oryza sativa) miRNA targets.

Archak S, Nagaraju J.

Genomics Proteomics Bioinformatics. 2007 Dec;5(3-4):196-206.PMID: 18267301 [PubMed - indexed for MEDLINE]Related articles

Cloning and characterization of microRNAs from wheat (Triticum aestivum L.).

Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q.

Genome Biol. 2007;8(6):R96.PMID: 17543110 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of 20 microRNAs from Oryza sativa.

Wang JF, Zhou H, Chen YQ, Luo QJ, Qu LH.

Nucleic Acids Res. 2004 Mar 12;32(5):1688-95. Print 2004.PMID: 15020705 [PubMed - indexed for MEDLINE]Related articlesFree article

Antiquity of microRNAs and their targets in land plants.

Axtell MJ, Bartel DP.

Plant Cell. 2005 Jun;17(6):1658-73. Epub 2005 Apr 22.PMID: 15849273 [PubMed - indexed for MEDLINE]Related articlesFree article

Arabidopsis small RNAs and their targets during cyst nematode parasitism.

Hewezi T, Howe P, Maier TR, Baum TJ.

Mol Plant Microbe Interact. 2008 Dec;21(12):1622-34.PMID: 18986258 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification and characteristics of microRNAs from Bombyx mori.

He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y.

BMC Genomics. 2008 May 28;9:248.PMID: 18507836 [PubMed - indexed for MEDLINE]Related articlesFree article