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Estimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression data.
Daub CO, Steuer R, Selbig J, Kloska S.
BMC Bioinformatics. 2004 Aug 31;5:118.PMID: 15339346 [PubMed - indexed for MEDLINE]Related articlesFree article
The mutual information: detecting and evaluating dependencies between variables.
Steuer R, Kurths J, Daub CO, Weise J, Selbig J.
Bioinformatics. 2002;18 Suppl 2:S231-40.PMID: 12386007 [PubMed - indexed for MEDLINE]Related articlesFree article
Effect of data normalization on fuzzy clustering of DNA microarray data.
Kim SY, Lee JW, Bae JS.
BMC Bioinformatics. 2006 Mar 14;7:134.PMID: 16533412 [PubMed - indexed for MEDLINE]Related articlesFree article
Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.
Datta S, Datta S.
BMC Bioinformatics. 2006 Aug 31;7:397.PMID: 16945146 [PubMed - indexed for MEDLINE]Related articlesFree article
Evaluation of gene-expression clustering via mutual information distance measure.
Priness I, Maimon O, Ben-Gal I.
BMC Bioinformatics. 2007 Mar 30;8:111.PMID: 17397530 [PubMed - indexed for MEDLINE]Related articlesFree article
Gene clustering based on clusterwide mutual information.
Zhou X, Wang X, Dougherty ER, Russ D, Suh E.
J Comput Biol. 2004;11(1):147-61.PMID: 15072693 [PubMed - indexed for MEDLINE]Related articles
Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data.
Zhao X, Cheung LW.
BMC Bioinformatics. 2007 Feb 28;8:67.PMID: 17328811 [PubMed - indexed for MEDLINE]Related articlesFree article
Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data.
Hulshizer R, Blalock EM.
BMC Bioinformatics. 2007 Jul 5;8:240.PMID: 17615071 [PubMed - indexed for MEDLINE]Related articlesFree article
FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data.
Fu L, Medico E.
BMC Bioinformatics. 2007 Jan 4;8:3.PMID: 17204155 [PubMed - indexed for MEDLINE]Related articlesFree article
Clustering short time series gene expression data.
Ernst J, Nau GJ, Bar-Joseph Z.
Bioinformatics. 2005 Jun;21 Suppl 1:i159-68.PMID: 15961453 [PubMed - indexed for MEDLINE]Related articlesFree article
Mining gene expression data by interpreting principal components.
Roden JC, King BW, Trout D, Mortazavi A, Wold BJ, Hart CE.
BMC Bioinformatics. 2006 Apr 7;7:194.PMID: 16600052 [PubMed - indexed for MEDLINE]Related articlesFree article
A copula method for modeling directional dependence of genes.
Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.
BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article
A unified framework for finding differentially expressed genes from microarray experiments.
Shaik JS, Yeasin M.
BMC Bioinformatics. 2007 Sep 18;8:347.PMID: 17877806 [PubMed - indexed for MEDLINE]Related articlesFree article
ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.
Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A.
BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S7.PMID: 16723010 [PubMed - indexed for MEDLINE]Related articlesFree article
Two-pass imputation algorithm for missing value estimation in gene expression time series.
Tsiporkova E, Boeva V.
J Bioinform Comput Biol. 2007 Oct;5(5):1005-22.PMID: 17933008 [PubMed - indexed for MEDLINE]Related articles
Inferring connectivity of genetic regulatory networks using information-theoretic criteria.
Zhao W, Serpedin E, Dougherty ER.
IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):262-74.PMID: 18451435 [PubMed - indexed for MEDLINE]Related articles
A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data.
Hart CE, Sharenbroich L, Bornstein BJ, Trout D, King B, Mjolsness E, Wold BJ.
Nucleic Acids Res. 2005 May 10;33(8):2580-94. Print 2005.PMID: 15886390 [PubMed - indexed for MEDLINE]Related articlesFree article
An entropy-based gene selection method for cancer classification using microarray data.
Liu X, Krishnan A, Mondry A.
BMC Bioinformatics. 2005 Mar 24;6:76.PMID: 15790388 [PubMed - indexed for MEDLINE]Related articlesFree article
Discovering biclusters in gene expression data based on high-dimensional linear geometries.
Gan X, Liew AW, Yan H.
BMC Bioinformatics. 2008 Apr 23;9:209.PMID: 18433477 [PubMed - indexed for MEDLINE]Related articlesFree article
Biologically supervised hierarchical clustering algorithms for gene expression data.
Boratyn GM, Datta S, Datta S.
Conf Proc IEEE Eng Med Biol Soc. 2006;1:5515-8.PMID: 17947147 [PubMed - indexed for MEDLINE]Related articles
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