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    Results: 1 to 20 of 100

    1.

    Modular decomposition of protein-protein interaction networks.

    Gagneur J, Krause R, Bouwmeester T, Casari G.

    Genome Biol. 2004;5(8):R57. Epub 2004 Jul 21.

    PMID:
    15287979
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Identification of functional modules in a PPI network by clique percolation clustering.

    Zhang S, Ning X, Zhang XS.

    Comput Biol Chem. 2006 Dec;30(6):445-51. Epub 2006 Nov 13.

    PMID:
    17098476
    [PubMed - indexed for MEDLINE]
    3.

    TNFalpha- and IKKbeta-mediated TANK/I-TRAF phosphorylation: implications for interaction with NEMO/IKKgamma and NF-kappaB activation.

    Bonif M, Meuwis MA, Close P, Benoit V, Heyninck K, Chapelle JP, Bours V, Merville MP, Piette J, Beyaert R, Chariot A.

    Biochem J. 2006 Mar 15;394(Pt 3):593-603.

    PMID:
    16336209
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.

    Del Mondo G, Eveillard D, Rusu I.

    Bioinformatics. 2009 Apr 1;25(7):926-32. Epub 2009 Feb 17.

    PMID:
    19223451
    [PubMed - indexed for MEDLINE]
    Free Article
    5.

    Regulation of Sox9 activity by crosstalk with nuclear factor-kappaB and retinoic acid receptors.

    Rockel JS, Kudirka JC, Guzi AJ, Bernier SM.

    Arthritis Res Ther. 2008;10(1):R3. Epub 2008 Jan 9.

    PMID:
    18182117
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Interaction between Rtg2p and Mks1p in the regulation of the RTG pathway of Saccharomyces cerevisiae.

    Ferreira Júnior JR, Spírek M, Liu Z, Butow RA.

    Gene. 2005 Jul 18;354:2-8.

    PMID:
    15967597
    [PubMed - indexed for MEDLINE]
    7.

    Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.

    Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, Andrews B, Boone C, Berger SL, Hieter P, Zhang Z, Brown GW, Ingles CJ, Emili A, Allis CD, Toczyski DP, Weissman JS, Greenblatt JF, Krogan NJ.

    Nature. 2007 Apr 12;446(7137):806-10. Epub 2007 Feb 21.

    PMID:
    17314980
    [PubMed - indexed for MEDLINE]
    8.

    Transcriptional networks: reverse-engineering gene regulation on a global scale.

    Chua G, Robinson MD, Morris Q, Hughes TR.

    Curr Opin Microbiol. 2004 Dec;7(6):638-46. Review.

    PMID:
    15556037
    [PubMed - indexed for MEDLINE]
    9.

    Prioritization of gene regulatory interactions from large-scale modules in yeast.

    Lee HJ, Manke T, Bringas R, Vingron M.

    BMC Bioinformatics. 2008 Jan 22;9:32.

    PMID:
    18211684
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Modularity of the transcriptional response of protein complexes in yeast.

    Simonis N, Gonze D, Orsi C, van Helden J, Wodak SJ.

    J Mol Biol. 2006 Oct 20;363(2):589-610. Epub 2006 Jul 3.

    PMID:
    16973176
    [PubMed - indexed for MEDLINE]
    11.

    Saccharomyces cerevisiae phospholipase C regulates transcription of Msn2p-dependent stress-responsive genes.

    Demczuk A, Guha N, Nguyen PH, Desai P, Chang J, Guzinska K, Rollins J, Ghosh CC, Goodwin L, Vancura A.

    Eukaryot Cell. 2008 Jun;7(6):967-79. Epub 2008 Mar 28.

    PMID:
    18375619
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Assembly of the Hap2p/Hap3p/Hap4p/Hap5p-DNA complex in Saccharomyces cerevisiae.

    McNabb DS, Pinto I.

    Eukaryot Cell. 2005 Nov;4(11):1829-39.

    PMID:
    16278450
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    A human-specific TNF-responsive promoter for Goodpasture antigen-binding protein.

    Granero F, Revert F, Revert-Ros F, Lainez S, Martínez-Martínez P, Saus J.

    FEBS J. 2005 Oct;272(20):5291-305.

    PMID:
    16218959
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    Interaction networks: lessons from large-scale studies in yeast.

    Cagney G.

    Proteomics. 2009 Oct;9(20):4799-811. Review.

    PMID:
    19743423
    [PubMed - indexed for MEDLINE]
    16.

    A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

    Hart GT, Lee I, Marcotte ER.

    BMC Bioinformatics. 2007 Jul 2;8:236.

    PMID:
    17605818
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Specificity and stability in topology of protein networks.

    Maslov S, Sneppen K.

    Science. 2002 May 3;296(5569):910-3.

    PMID:
    11988575
    [PubMed - indexed for MEDLINE]
    18.

    Protein complex compositions predicted by structural similarity.

    Davis FP, Braberg H, Shen MY, Pieper U, Sali A, Madhusudhan MS.

    Nucleic Acids Res. 2006 May 31;34(10):2943-52. Print 2006.

    PMID:
    16738133
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Proteome survey reveals modularity of the yeast cell machinery.

    Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dümpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

    Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.

    PMID:
    16429126
    [PubMed - indexed for MEDLINE]
    20.

    Gene duplication and hierarchical modularity in intracellular interaction networks.

    Hallinan J.

    Biosystems. 2004 Apr-Jun;74(1-3):51-62.

    PMID:
    15125992
    [PubMed - indexed for MEDLINE]

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