PubMed

Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1.

Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L.

Genome Biol. 2004;5(8):R52. Epub 2004 Jul 12.PMID: 15287974 [PubMed - indexed for MEDLINE]Related articlesFree article

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.

Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, Baliga NS, Thorsson V.

Genome Biol. 2006;7(5):R36. Epub 2006 May 10.PMID: 16686963 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea.

Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV.

Genome Res. 2004 Nov;14(11):2221-34. Erratum in: Genome Res. 2004 Dec;14(12):2510. PMID: 15520287 [PubMed - indexed for MEDLINE]Related articlesFree article

Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1.

Baliga NS, Bjork SJ, Bonneau R, Pan M, Iloanusi C, Kottemann MC, Hood L, DiRuggiero J.

Genome Res. 2004 Jun;14(6):1025-35. Epub 2004 May 12.PMID: 15140832 [PubMed - indexed for MEDLINE]Related articlesFree article

Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter.

Gan RR, Yi EC, Chiu Y, Lee H, Kao YC, Wu TH, Aebersold R, Goodlett DR, Ng WV.

Mol Cell Proteomics. 2006 Jun;5(6):987-97. Epub 2006 Feb 23.PMID: 16497792 [PubMed - indexed for MEDLINE]Related articlesFree article

Low-pass sequencing for microbial comparative genomics.

Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L.

BMC Genomics. 2004 Jan 12;5(1):3.PMID: 14718067 [PubMed - indexed for MEDLINE]Related articlesFree article

Essential and non-essential DNA replication genes in the model halophilic Archaeon, Halobacterium sp. NRC-1.

Berquist BR, DasSarma P, DasSarma S.

BMC Genet. 2007 Jun 8;8:31.PMID: 17559652 [PubMed - indexed for MEDLINE]Related articlesFree article

Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1.

Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV.

Mol Cell Proteomics. 2003 Aug;2(8):506-24. Epub 2003 Jul 18.PMID: 12872007 [PubMed - indexed for MEDLINE]Related articlesFree article

Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

Anantharaman V, Koonin EV, Aravind L.

J Mol Biol. 2001 Apr 13;307(5):1271-92.PMID: 11292341 [PubMed - indexed for MEDLINE]Related articles

Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach.

Koonin EV, Wolf YI, Aravind L.

Genome Res. 2001 Feb;11(2):240-52.PMID: 11157787 [PubMed - indexed for MEDLINE]Related articlesFree article

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach.

Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L.

Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):14913-8. Epub 2002 Oct 28.PMID: 12403819 [PubMed - indexed for MEDLINE]Related articlesFree article

Proteomics of Halophilic archaea.

Joo WA, Kim CW.

J Chromatogr B Analyt Technol Biomed Life Sci. 2005 Feb 5;815(1-2):237-50.PMID: 15652813 [PubMed - indexed for MEDLINE]Related articles

Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA.

Coker JA, DasSarma S.

BMC Genet. 2007 Sep 24;8:61.PMID: 17892563 [PubMed - indexed for MEDLINE]Related articlesFree article

Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins.

Shmuely H, Dinitz E, Dahan I, Eichler J, Fischer D, Shaanan B.

Bioinformatics. 2004 May 22;20(8):1248-53. Epub 2004 Feb 10.PMID: 14871864 [PubMed - indexed for MEDLINE]Related articlesFree article

The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.

Woodson JD, Peck RF, Krebs MP, Escalante-Semerena JC.

J Bacteriol. 2003 Jan;185(1):311-6.PMID: 12486068 [PubMed - indexed for MEDLINE]Related articlesFree article

An archaeal protein with homology to the eukaryotic translation initiation factor 5A shows ribonucleolytic activity.

Wagner S, Klug G.

J Biol Chem. 2007 May 11;282(19):13966-76. Epub 2007 Mar 16.PMID: 17369252 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of protein function from protein sequence and structure.

Whisstock JC, Lesk AM.

Q Rev Biophys. 2003 Aug;36(3):307-40. Review.PMID: 15029827 [PubMed - indexed for MEDLINE]Related articles

Structure-based functional inference in structural genomics.

Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R.

J Struct Funct Genomics. 2003;4(2-3):129-35. Review.PMID: 14649297 [PubMed - indexed for MEDLINE]Related articles

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.

Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S20.PMID: 16351747 [PubMed - indexed for MEDLINE]Related articlesFree article

An integrated systems approach for understanding cellular responses to gamma radiation.

Whitehead K, Kish A, Pan M, Kaur A, Reiss DJ, King N, Hohmann L, DiRuggiero J, Baliga NS.

Mol Syst Biol. 2006;2:47. Epub 2006 Sep 12.PMID: 16969339 [PubMed - indexed for MEDLINE]Related articlesFree article