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Systematic quantification of gene interactions by phenotypic array analysis.

Hartman JL 4th, Tippery NP.

Genome Biol. 2004;5(7):R49. Epub 2004 Jun 29.PMID: 15239834 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative analysis of multiple genome-scale data sets.

Werner-Washburne M, Wylie B, Boyack K, Fuge E, Galbraith J, Weber J, Davidson G.

Genome Res. 2002 Oct;12(10):1564-73.PMID: 12368249 [PubMed - indexed for MEDLINE]Related articlesFree article

Combined analysis of expression data and transcription factor binding sites in the yeast genome.

Nagaraj VH, O'Flanagan RA, Bruning AR, Mathias JR, Vershon AK, Sengupta AM.

BMC Genomics. 2004 Aug 26;5(1):59.PMID: 15331021 [PubMed - indexed for MEDLINE]Related articlesFree article

Chemical-genetic approaches for exploring the mode of action of natural products.

Lopez A, Parsons AB, Nislow C, Giaever G, Boone C.

Prog Drug Res. 2008;66:237, 239-71. Review.PMID: 18416308 [PubMed - indexed for MEDLINE]Related articles

Reporter-based synthetic genetic array analysis: a functional genomics approach for investigating the cell cycle in Saccharomyces cerevisiae.

Sassi HE, Bastajian N, Kainth P, Andrews BJ.

Methods Mol Biol. 2009;548:55-73.PMID: 19521819 [PubMed - indexed for MEDLINE]Related articles

Vector algebra in the analysis of genome-wide expression data.

Kuruvilla FG, Park PJ, Schreiber SL.

Genome Biol. 2002;3(3):RESEARCH0011. Epub 2002 Feb 13.PMID: 11897023 [PubMed - indexed for MEDLINE]Related articlesFree article

Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering.

de Brevern AG, Hazout S, Malpertuy A.

BMC Bioinformatics. 2004 Aug 23;5:114.PMID: 15324460 [PubMed - indexed for MEDLINE]Related articlesFree article

Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae.

Fay JC, McCullough HL, Sniegowski PD, Eisen MB.

Genome Biol. 2004;5(4):R26. Epub 2004 Mar 24.PMID: 15059259 [PubMed - indexed for MEDLINE]Related articlesFree article

Inferring yeast cell cycle regulators and interactions using transcription factor activities.

Yang YL, Suen J, Brynildsen MP, Galbraith SJ, Liao JC.

BMC Genomics. 2005 Jun 10;6(1):90.PMID: 15949038 [PubMed - indexed for MEDLINE]Related articlesFree article

A robust toolkit for functional profiling of the yeast genome.

Pan X, Yuan DS, Xiang D, Wang X, Sookhai-Mahadeo S, Bader JS, Hieter P, Spencer F, Boeke JD.

Mol Cell. 2004 Nov 5;16(3):487-96.PMID: 15525520 [PubMed - indexed for MEDLINE]Related articles

Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: a three factor design.

Fazio A, Jewett MC, Daran-Lapujade P, Mustacchi R, Usaite R, Pronk JT, Workman CT, Nielsen J.

BMC Genomics. 2008 Jul 18;9:341.PMID: 18638364 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle.

Wu WS, Li WH, Chen BS.

BMC Bioinformatics. 2006 Sep 29;7:421.PMID: 17010188 [PubMed - indexed for MEDLINE]Related articlesFree article

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Fröhlich F, Walther TC, Mann M.

Nature. 2008 Oct 30;455(7217):1251-4. Epub 2008 Sep 28.PMID: 18820680 [PubMed - indexed for MEDLINE]Related articles

Stringent mating-type-regulated auxotrophy increases the accuracy of systematic genetic interaction screens with Saccharomyces cerevisiae mutant arrays.

Singh I, Pass R, Togay SO, Rodgers JW, Hartman JL 4th.

Genetics. 2009 Jan;181(1):289-300. Epub 2008 Oct 28.PMID: 18957706 [PubMed - indexed for MEDLINE]Related articlesFree article

Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae.

Teste MA, Duquenne M, François JM, Parrou JL.

BMC Mol Biol. 2009 Oct 30;10:99.PMID: 19874630 [PubMed - indexed for MEDLINE]Related articlesFree article

A latent variable model for chemogenomic profiling.

Flaherty P, Giaever G, Kumm J, Jordan MI, Arkin AP.

Bioinformatics. 2005 Aug 1;21(15):3286-93. Epub 2005 May 26.PMID: 15919724 [PubMed - indexed for MEDLINE]Related articlesFree article

Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments.

Townsend JP, Hartl DL.

Genome Biol. 2002;3(12):RESEARCH0071. Epub 2002 Nov 20.PMID: 12537560 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of genetic interactions on a genome-wide scale in budding yeast: diploid-based synthetic lethality analysis by microarray.

Meluh PB, Pan X, Yuan DS, Tiffany C, Chen O, Sookhai-Mahadeo S, Wang X, Peyser BD, Irizarry R, Spencer FA, Boeke JD.

Methods Mol Biol. 2008;416:221-47.PMID: 18392971 [PubMed - indexed for MEDLINE]Related articles

Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays.

Ronald J, Akey JM, Whittle J, Smith EN, Yvert G, Kruglyak L.

Genome Res. 2005 Feb;15(2):284-91.PMID: 15687292 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene function inference from gene expression of deletion mutants.

Bidaut G.

Methods Mol Biol. 2007;408:1-18.PMID: 18314574 [PubMed - indexed for MEDLINE]Related articles