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    Results: 1 to 20 of 83

    1.

    Cross-species comparison of genome-wide expression patterns.

    Zhou XJ, Gibson G.

    Genome Biol. 2004;5(7):232. Epub 2004 Jun 21. Review.

    PMID:
    15239823
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

    Kuhn A, Luthi-Carter R, Delorenzi M.

    BMC Bioinformatics. 2008 Jan 17;9:26.

    PMID:
    18201381
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Systematic discovery of functional modules and context-specific functional annotation of human genome.

    Huang Y, Li H, Hu H, Yan X, Waterman MS, Huang H, Zhou XJ.

    Bioinformatics. 2007 Jul 1;23(13):i222-9.

    PMID:
    17646300
    [PubMed - indexed for MEDLINE]
    Free Article
    4.

    Using high-density exon arrays to profile gene expression in closely related species.

    Lin L, Liu S, Brockway H, Seok J, Jiang P, Wong WH, Xing Y.

    Nucleic Acids Res. 2009 Jul;37(12):e90. Epub 2009 May 27.

    PMID:
    19474342
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Predicting tissue-specific enhancers in the human genome.

    Pennacchio LA, Loots GG, Nobrega MA, Ovcharenko I.

    Genome Res. 2007 Feb;17(2):201-11. Epub 2007 Jan 8.

    PMID:
    17210927
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms.

    Lelandais G, Vincens P, Badel-Chagnon A, Vialette S, Jacq C, Hazout S.

    Bioinformatics. 2006 Jun 1;22(11):1359-66. Epub 2006 Mar 9.

    PMID:
    16527831
    [PubMed - indexed for MEDLINE]
    Free Article
    7.

    Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

    Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

    BMC Bioinformatics. 2007 Aug 14;8:299.

    PMID:
    17697349
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Evolutionary conservation of expression profiles between human and mouse orthologous genes.

    Liao BY, Zhang J.

    Mol Biol Evol. 2006 Mar;23(3):530-40. Epub 2005 Nov 9.

    PMID:
    16280543
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.

    Fang H, Tong W, Perkins R, Shi L, Hong H, Cao X, Xie Q, Yim SH, Ward JM, Pitot HC, Dragan YP.

    BMC Bioinformatics. 2005 Jul 15;6 Suppl 2:S6.

    PMID:
    16026603
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

    Prieto C, Risueño A, Fontanillo C, De las Rivas J.

    PLoS One. 2008;3(12):e3911. Epub 2008 Dec 15.

    PMID:
    19081792
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines.

    Wang L, Oberg AL, Asmann YW, Sicotte H, McDonnell SK, Riska SM, Liu W, Steer CJ, Subramanian S, Cunningham JM, Cerhan JR, Thibodeau SN.

    PLoS One. 2009 Jun 11;4(6):e5878.

    PMID:
    19517021
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Genome-wide expression profiling in malaria infection reveals transcriptional changes associated with lethal and nonlethal outcomes.

    Schaecher K, Kumar S, Yadava A, Vahey M, Ockenhouse CF.

    Infect Immun. 2005 Sep;73(9):6091-100.

    PMID:
    16113330
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Modeling of SEB-induced host gene expression to correlate in vitro to in vivo responses.

    Hammamieh R, Bi S, Das R, Neill R, Jett M.

    Biosens Bioelectron. 2004 Nov 1;20(4):719-27.

    PMID:
    15522586
    [PubMed - indexed for MEDLINE]
    15.

    Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.

    Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, Franz H, Weiss G, Lachmann M, Pääbo S.

    Science. 2005 Sep 16;309(5742):1850-4. Epub 2005 Sep 1.

    PMID:
    16141373
    [PubMed - indexed for MEDLINE]
    16.

    Evaluation of gene importance in microarray data based upon probability of selection.

    Fu LM, Fu-Liu CS.

    BMC Bioinformatics. 2005 Mar 22;6:67.

    PMID:
    15784140
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Comparative genome analyses of nervous system-specific genes.

    Noda AO, Ikeo K, Gojobori T.

    Gene. 2006 Jan 3;365:130-6. Epub 2005 Dec 20.

    PMID:
    16376029
    [PubMed - indexed for MEDLINE]
    18.

    Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.

    Jiao Y, Ma L, Strickland E, Deng XW.

    Plant Cell. 2005 Dec;17(12):3239-56. Epub 2005 Nov 11.

    PMID:
    16284311
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse.

    Huminiecki L, Wolfe KH.

    Genome Res. 2004 Oct;14(10A):1870-9.

    PMID:
    15466287
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

    Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

    BMC Bioinformatics. 2008 Apr 21;9:203.

    PMID:
    18426580
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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