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    Results: 1 to 20 of 226

    1.

    Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments.

    Khatri P, Bhavsar P, Bawa G, Draghici S.

    Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W449-56.PMID: 15215428 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Recent additions and improvements to the Onto-Tools.

    Khatri P, Sellamuthu S, Malhotra P, Amin K, Done A, Draghici S.

    Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W762-5.PMID: 15980579 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Onto-Tools: new additions and improvements in 2006.

    Khatri P, Voichita C, Kattan K, Ansari N, Khatri A, Georgescu C, Tarca AL, Draghici S.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W206-11. Epub 2007 Jun 21.PMID: 17584796 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.

    Khatri P, Desai V, Tarca AL, Sellamuthu S, Wildman DE, Romero R, Draghici S.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W626-31.PMID: 16845086 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.

    Draghici S, Khatri P, Bhavsar P, Shah A, Krawetz SA, Tainsky MA.

    Nucleic Acids Res. 2003 Jul 1;31(13):3775-81.PMID: 12824416 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    MILANO--custom annotation of microarray results using automatic literature searches.

    Rubinstein R, Simon I.

    BMC Bioinformatics. 2005 Jan 20;6:12.PMID: 15661078 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Onto-CC: a web server for identifying Gene Ontology conceptual clusters.

    Romero-Zaliz R, Del Val C, Cobb JP, Zwir I.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W352-7. Epub 2008 Jun 10.PMID: 18544607 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    GeneTools--application for functional annotation and statistical hypothesis testing.

    Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

    BMC Bioinformatics. 2006 Oct 24;7:470.PMID: 17062145 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

    Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

    BMC Bioinformatics. 2006 Apr 7;7:195.PMID: 16603075 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data.

    Hsiao A, Ideker T, Olefsky JM, Subramaniam S.

    Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W627-32.PMID: 15980550 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Biosphere: the interoperation of web services in microarray cluster analysis.

    Cheung KH, de Knikker R, Guo Y, Zhong G, Hager J, Yip KY, Kwan AK, Li P, Cheung DW.

    Appl Bioinformatics. 2004;3(4):253-6.PMID: 15702956 [PubMed - indexed for MEDLINE]Related articles

    12.

    GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis.

    Zheng Q, Wang XJ.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W358-63. Epub 2008 May 16.PMID: 18487275 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).

    Zeeberg BR, Qin H, Narasimhan S, Sunshine M, Cao H, Kane DW, Reimers M, Stephens RM, Bryant D, Burt SK, Elnekave E, Hari DM, Wynn TA, Cunningham-Rundles C, Stewart DM, Nelson D, Weinstein JN.

    BMC Bioinformatics. 2005 Jul 5;6:168.PMID: 15998470 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

    Al-Shahrour F, Carbonell J, Minguez P, Goetz S, Conesa A, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W341-6. Epub 2008 May 31.PMID: 18515841 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms.

    Penkett CJ, Morris JA, Wood V, Bähler J.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W330-4.PMID: 16845020 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining.

    Masseroli M, Martucci D, Pinciroli F.

    Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W293-300.PMID: 15215397 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies.

    Zhang B, Schmoyer D, Kirov S, Snoddy J.

    BMC Bioinformatics. 2004 Feb 18;5:16.PMID: 14975175 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Gene Class expression: analysis tool of Gene Ontology terms with gene expression data.

    Pereira GS, Brandão RM, Giuliatti S, Zago MA, Silva WA Jr.

    Genet Mol Res. 2006 Mar 31;5(1):108-14.PMID: 16755502 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

    Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

    BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

    Usadel B, Nagel A, Steinhauser D, Gibon Y, Bläsing OE, Redestig H, Sreenivasulu N, Krall L, Hannah MA, Poree F, Fernie AR, Stitt M.

    BMC Bioinformatics. 2006 Dec 18;7:535.PMID: 17176458 [PubMed - indexed for MEDLINE]Related articlesFree article

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