PubMed

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.

Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ.

BMC Bioinformatics. 2004 Jun 22;5:79.PMID: 15212693 [PubMed - indexed for MEDLINE]Related articlesFree article

Phospho.ELM: a database of phosphorylation sites--update 2008.

Diella F, Gould CM, Chica C, Via A, Gibson TJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4. Epub 2007 Oct 25.PMID: 17962309 [PubMed - indexed for MEDLINE]Related articlesFree article

Charge environments around phosphorylation sites in proteins.

Kitchen J, Saunders RE, Warwicker J.

BMC Struct Biol. 2008 Mar 25;8:19.PMID: 18366741 [PubMed - indexed for MEDLINE]Related articlesFree article

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.

Zanzoni A, Ausiello G, Via A, Gherardini PF, Helmer-Citterich M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D229-31. Epub 2006 Nov 16.PMID: 17142231 [PubMed - indexed for MEDLINE]Related articlesFree article

ELM: the status of the 2010 eukaryotic linear motif resource.

Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. Epub 2009 Nov 17.PMID: 19920119 [PubMed - in process]Related articlesFree article

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation.

Hornbeck PV, Chabra I, Kornhauser JM, Skrzypek E, Zhang B.

Proteomics. 2004 Jun;4(6):1551-61.PMID: 15174125 [PubMed - indexed for MEDLINE]Related articles

MINT: a Molecular INTeraction database.

Zanzoni A, Montecchi-Palazzi L, Quondam M, Ausiello G, Helmer-Citterich M, Cesareni G.

FEBS Lett. 2002 Feb 20;513(1):135-40. Review.PMID: 11911893 [PubMed - indexed for MEDLINE]Related articles

PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database.

Yang CY, Chang CH, Yu YL, Lin TC, Lee SA, Yen CC, Yang JM, Lai JM, Hong YR, Tseng TL, Chao KM, Huang CY.

Bioinformatics. 2008 Aug 15;24(16):i14-20.PMID: 18689816 [PubMed - indexed for MEDLINE]Related articlesFree article

PhosphoBase: a database of phosphorylation sites.

Blom N, Kreegipuu A, Brunak S.

Nucleic Acids Res. 1998 Jan 1;26(1):382-6.PMID: 9399879 [PubMed - indexed for MEDLINE]Related articlesFree article

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.

Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ.

Nucleic Acids Res. 2003 Jul 1;31(13):3625-30.PMID: 12824381 [PubMed - indexed for MEDLINE]Related articlesFree article

NetworKIN: a resource for exploring cellular phosphorylation networks.

Linding R, Jensen LJ, Pasculescu A, Olhovsky M, Colwill K, Bork P, Yaffe MB, Pawson T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D695-9. Epub 2007 Nov 2.PMID: 17981841 [PubMed - indexed for MEDLINE]Related articlesFree article

An online literature mining tool for protein phosphorylation.

Yuan X, Hu ZZ, Wu HT, Torii M, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH.

Bioinformatics. 2006 Jul 1;22(13):1668-9. Epub 2006 Apr 27.PMID: 16644790 [PubMed - indexed for MEDLINE]Related articlesFree article

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.

Durek P, Schudoma C, Weckwerth W, Selbig J, Walther D.

BMC Bioinformatics. 2009 Apr 21;10:117.PMID: 19383128 [PubMed - indexed for MEDLINE]Related articlesFree article

PhosphoBase, a database of phosphorylation sites: release 2.0.

Kreegipuu A, Blom N, Brunak S.

Nucleic Acids Res. 1999 Jan 1;27(1):237-9.PMID: 9847189 [PubMed - indexed for MEDLINE]Related articlesFree article

dbPTM: an information repository of protein post-translational modification.

Lee TY, Huang HD, Hung JH, Huang HY, Yang YS, Wang TH.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D622-7.PMID: 16381945 [PubMed - indexed for MEDLINE]Related articlesFree article

Proteome-wide prediction of PKA phosphorylation sites in eukaryotic kingdom.

Gao X, Jin C, Ren J, Yao X, Xue Y.

Genomics. 2008 Dec;92(6):457-63. Epub 2008 Oct 10.PMID: 18817865 [PubMed - indexed for MEDLINE]Related articles

Unlimited multistability in multisite phosphorylation systems.

Thomson M, Gunawardena J.

Nature. 2009 Jul 9;460(7252):274-7. Epub 2009 Jun 17.PMID: 19536158 [PubMed - indexed for MEDLINE]Related articles

Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.

Nühse TS, Stensballe A, Jensen ON, Peck SC.

Plant Cell. 2004 Sep;16(9):2394-405. Epub 2004 Aug 12.PMID: 15308754 [PubMed - indexed for MEDLINE]Related articlesFree article

Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites.

Saunders NF, Brinkworth RI, Huber T, Kemp BE, Kobe B.

BMC Bioinformatics. 2008 May 26;9:245.PMID: 18501020 [PubMed - indexed for MEDLINE]Related articlesFree article

The RESID Database of protein structure modifications.

Garavelli JS.

Nucleic Acids Res. 1999 Jan 1;27(1):198-9.PMID: 9847179 [PubMed - indexed for MEDLINE]Related articlesFree article