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    Results: 1 to 20 of 259

    1.

    Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

    Mecham BH, Klus GT, Strovel J, Augustus M, Byrne D, Bozso P, Wetmore DZ, Mariani TJ, Kohane IS, Szallasi Z.

    Nucleic Acids Res. 2004 May 25;32(9):e74.PMID: 15161944 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.

    Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.

    BMC Bioinformatics. 2005 Apr 25;6:107.PMID: 15850491 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips.

    van Ruissen F, Ruijter JM, Schaaf GJ, Asgharnegad L, Zwijnenburg DA, Kool M, Baas F.

    BMC Genomics. 2005 Jun 14;6:91.PMID: 15955238 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Comparison of the predictive accuracy of DNA array-based multigene classifiers across cDNA arrays and Affymetrix GeneChips.

    Stec J, Wang J, Coombes K, Ayers M, Hoersch S, Gold DL, Ross JS, Hess KR, Tirrell S, Linette G, Hortobagyi GN, Fraser Symmans W, Pusztai L.

    J Mol Diagn. 2005 Aug;7(3):357-67.PMID: 16049308 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Increased measurement accuracy for sequence-verified microarray probes.

    Mecham BH, Wetmore DZ, Szallasi Z, Sadovsky Y, Kohane I, Mariani TJ.

    Physiol Genomics. 2004 Aug 11;18(3):308-15.PMID: 15161964 [PubMed - indexed for MEDLINE]Related articles

    6.

    Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes.

    Warnat P, Eils R, Brors B.

    BMC Bioinformatics. 2005 Nov 4;6:265.PMID: 16271137 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines.

    Rogojina AT, Orr WE, Song BK, Geisert EE Jr.

    Mol Vis. 2003 Oct 6;9:482-96.PMID: 14551534 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Combining gene expression data from different generations of oligonucleotide arrays.

    Hwang KB, Kong SW, Greenberg SA, Park PJ.

    BMC Bioinformatics. 2004 Oct 25;5:159.PMID: 15504239 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    A rapid method for microarray cross platform comparisons using gene expression signatures.

    Cheadle C, Becker KG, Cho-Chung YS, Nesterova M, Watkins T, Wood W 3rd, Prabhu V, Barnes KC.

    Mol Cell Probes. 2007 Feb;21(1):35-46. Epub 2006 Aug 10.PMID: 16982174 [PubMed - indexed for MEDLINE]Related articles

    10.

    Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis.

    Holloway AJ, Oshlack A, Diyagama DS, Bowtell DD, Smyth GK.

    BMC Bioinformatics. 2006 Nov 22;7:511.PMID: 17118209 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment.

    Severgnini M, Bicciato S, Mangano E, Scarlatti F, Mezzelani A, Mattioli M, Ghidoni R, Peano C, Bonnal R, Viti F, Milanesi L, De Bellis G, Battaglia C.

    Anal Biochem. 2006 Jun 1;353(1):43-56. Epub 2006 Apr 3.PMID: 16624241 [PubMed - indexed for MEDLINE]Related articles

    12.

    Are data from different gene expression microarray platforms comparable?

    Järvinen AK, Hautaniemi S, Edgren H, Auvinen P, Saarela J, Kallioniemi OP, Monni O.

    Genomics. 2004 Jun;83(6):1164-8.PMID: 15177569 [PubMed - indexed for MEDLINE]Related articles

    13.

    Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells.

    Maouche S, Poirier O, Godefroy T, Olaso R, Gut I, Collet JP, Montalescot G, Cambien F.

    BMC Genomics. 2008 Jun 25;9:302.PMID: 18578872 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    A comparison of oligonucleotide and cDNA-based microarray systems.

    Mah N, Thelin A, Lu T, Nikolaus S, Kühbacher T, Gurbuz Y, Eickhoff H, Klöppel G, Lehrach H, Mellgård B, Costello CM, Schreiber S.

    Physiol Genomics. 2004 Feb 13;16(3):361-70.PMID: 14645736 [PubMed - indexed for MEDLINE]Related articles

    15.

    Scaling of gene expression data allowing the comparison of different gene expression platforms.

    van Ruissen F, Schaaf GJ, Kool M, Baas F, Ruijter JM.

    Methods Mol Biol. 2008;387:169-83.PMID: 18287631 [PubMed - indexed for MEDLINE]Related articles

    16.

    Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study.

    Arikawa E, Sun Y, Wang J, Zhou Q, Ning B, Dial SL, Guo L, Yang J.

    BMC Genomics. 2008 Jul 11;9:328.PMID: 18620571 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    RefSeq refinements of UniGene-based gene matching improve the correlation of expression measurements between two microarray platforms.

    Ji Y, Coombes K, Zhang J, Wen S, Mitchell J, Pusztai L, Symmans WF, Wang J.

    Appl Bioinformatics. 2006;5(2):89-98.PMID: 16722773 [PubMed - indexed for MEDLINE]Related articles

    18.

    Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.

    Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P.

    Nucleic Acids Res. 2005 Oct 19;33(18):5914-23. Print 2005.PMID: 16237126 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

    Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.

    BMC Bioinformatics. 2007 Oct 25;8:412.PMID: 17961233 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

    Culhane AC, Perrière G, Higgins DG.

    BMC Bioinformatics. 2003 Nov 21;4:59.PMID: 14633289 [PubMed - indexed for MEDLINE]Related articlesFree article

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