PubMed

ELXR: a resource for rapid exon-directed sequence analysis.

Schageman JJ, Horton CJ, Niu S, Garner HR, Pertsemlidis A.

Genome Biol. 2004;5(5):R36. Epub 2004 Apr 28.PMID: 15128450 [PubMed - indexed for MEDLINE]Related articlesFree article

PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification.

Spandidos A, Wang X, Wang H, Seed B.

Nucleic Acids Res. 2010 Jan;38(Database issue):D792-9. Epub 2009 Nov 11.PMID: 19906719 [PubMed - indexed for MEDLINE]Related articlesFree article

EasyExonPrimer: automated primer design for exon sequences.

Wu X, Munroe DJ.

Appl Bioinformatics. 2006;5(2):119-20.PMID: 16722777 [PubMed - indexed for MEDLINE]Related articles

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2008 May 29;9:253.PMID: 18510760 [PubMed - indexed for MEDLINE]Related articlesFree article

methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.

Pattyn F, Hoebeeck J, Robbrecht P, Michels E, De Paepe A, Bottu G, Coornaert D, Herzog R, Speleman F, Vandesompele J.

BMC Bioinformatics. 2006 Nov 9;7:496.PMID: 17094804 [PubMed - indexed for MEDLINE]Related articlesFree article

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing.

Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S.

BMC Bioinformatics. 2008 Apr 11;9:191.PMID: 18405373 [PubMed - indexed for MEDLINE]Related articlesFree article

SOP3: a web-based tool for selection of oligonucleotide primers for single nucleotide polymorphism analysis by Pyrosequencing.

Alexander AM, Pecoraro C, Styche A, Rudert WA, Benos PV, Ringquist S, Trucco M.

Biotechniques. 2005 Jan;38(1):87-94.PMID: 15679090 [PubMed - indexed for MEDLINE]Related articlesFree article

PathoGene: a pathogen coding sequence discovery and analysis resource.

Ng KW, Lawson J, Garner HR.

Biotechniques. 2004 Aug;37(2):218, 220-2.PMID: 15335212 [PubMed - indexed for MEDLINE]Related articles

Web-based primer design software for genome-scale genotyping by pyrosequencing.

Ringquist S, Pecoraro C, Lu Y, Styche A, Rudert WA, Benos PV, Trucco M.

Methods Mol Biol. 2007;373:25-38.PMID: 17185755 [PubMed - indexed for MEDLINE]Related articles

SNPbox: a modular software package for large-scale primer design.

Weckx S, De Rijk P, Van Broeckhoven C, Del-Favero J.

Bioinformatics. 2005 Feb 1;21(3):385-7. Epub 2004 Sep 3.PMID: 15347573 [PubMed - indexed for MEDLINE]Related articlesFree article

The PCR suite.

van Baren MJ, Heutink P.

Bioinformatics. 2004 Mar 1;20(4):591-3. Epub 2004 Jan 29.PMID: 14751986 [PubMed - indexed for MEDLINE]Related articlesFree article

Graphical design of primers with PerlPrimer.

Marshall O.

Methods Mol Biol. 2007;402:403-14. Review.PMID: 17951808 [PubMed - indexed for MEDLINE]Related articles

PrimerZ: streamlined primer design for promoters, exons and human SNPs.

Tsai MF, Lin YJ, Cheng YC, Lee KH, Huang CC, Chen YT, Yao A.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W63-5. Epub 2007 May 30.PMID: 17537812 [PubMed - indexed for MEDLINE]Related articlesFree article

A comprehensive collection of experimentally validated primers for Polymerase Chain Reaction quantitation of murine transcript abundance.

Spandidos A, Wang X, Wang H, Dragnev S, Thurber T, Seed B.

BMC Genomics. 2008 Dec 24;9:633.PMID: 19108745 [PubMed - indexed for MEDLINE]Related articlesFree article

Disperse--a software system for design of selector probes for exon resequencing applications.

Stenberg J, Zhang M, Ji H.

Bioinformatics. 2009 Mar 1;25(5):666-7. Epub 2009 Jan 21.PMID: 19158162 [PubMed - indexed for MEDLINE]Related articlesFree article

Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans.

Shao X, Shepelev V, Fedorov A.

Bioinformatics. 2006 Mar 15;22(6):692-8. Epub 2005 Nov 24.PMID: 16308355 [PubMed - indexed for MEDLINE]Related articlesFree article

MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays.

Rouchka EC, Khalyfa A, Cooper NG.

BMC Bioinformatics. 2005 Jul 13;6:175.PMID: 16014168 [PubMed - indexed for MEDLINE]Related articlesFree article

AcePrimer: automation of PCR primer design based on gene structure.

McKay SJ, Jones SJ.

Bioinformatics. 2002 Nov;18(11):1538-9.PMID: 12424127 [PubMed - indexed for MEDLINE]Related articlesFree article

QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.

Arvidsson S, Kwasniewski M, Riaño-Pachón DM, Mueller-Roeber B.

BMC Bioinformatics. 2008 Nov 1;9:465.PMID: 18976492 [PubMed - indexed for MEDLINE]Related articlesFree article

MultiPrimer: software for multiplex primer design.

Lee C, Wu JS, Shiue YL, Liang HL.

Appl Bioinformatics. 2006;5(2):99-109.PMID: 16722774 [PubMed - indexed for MEDLINE]Related articles