PubMed

Comparing gene discovery from Affymetrix GeneChip microarrays and Clontech PCR-select cDNA subtraction: a case study.

Cao W, Epstein C, Liu H, DeLoughery C, Ge N, Lin J, Diao R, Cao H, Long F, Zhang X, Chen Y, Wright PS, Busch S, Wenck M, Wong K, Saltzman AG, Tang Z, Liu L, Zilberstein A.

BMC Genomics. 2004 Apr 27;5(1):26.PMID: 15113399 [PubMed - indexed for MEDLINE]Related articlesFree article

Differentially profiling the low-expression transcriptomes of human hepatoma using a novel SSH/microarray approach.

Pan YS, Lee YS, Lee YL, Lee WC, Hsieh SY.

BMC Genomics. 2006 May 31;7:131.PMID: 16737534 [PubMed - indexed for MEDLINE]Related articlesFree article

SSH adequacy to preimplantation mammalian development: scarce specific transcripts cloning despite irregular normalisation.

Bui LC, Léandri RD, Renard JP, Duranthon V.

BMC Genomics. 2005 Nov 8;6:155.PMID: 16277657 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovery of differentially expressed genes in human breast cancer using subtracted cDNA libraries and cDNA microarrays.

Jiang Y, Harlocker SL, Molesh DA, Dillon DC, Stolk JA, Houghton RL, Repasky EA, Badaro R, Reed SG, Xu J.

Oncogene. 2002 Mar 28;21(14):2270-82.PMID: 11948410 [PubMed - indexed for MEDLINE]Related articlesFree article

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.PMID: 16253343 [PubMed - indexed for MEDLINE]Related articles

Transcript-specific expression profiles derived from sequence-based analysis of standard microarrays.

Moll AG, Lindenmeyer MT, Kretzler M, Nelson PJ, Zimmer R, Cohen CD.

PLoS One. 2009;4(3):e4702. Epub 2009 Mar 11.PMID: 19277110 [PubMed - indexed for MEDLINE]Related articlesFree article

Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array.

Coram TE, Settles ML, Chen X.

BMC Genomics. 2009 May 29;10:253.PMID: 19480707 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative RNA expression analyses from small-scale, single-donor platelet samples.

Hillmann AG, Harmon S, Park SD, O'brien J, Shields DC, Kenny D.

J Thromb Haemost. 2006 Feb;4(2):349-56.PMID: 16420564 [PubMed - indexed for MEDLINE]Related articles

Validation of oligonucleotide microarray data using microfluidic low-density arrays: a new statistical method to normalize real-time RT-PCR data.

Abruzzo LV, Lee KY, Fuller A, Silverman A, Keating MJ, Medeiros LJ, Coombes KR.

Biotechniques. 2005 May;38(5):785-92.PMID: 15945375 [PubMed - indexed for MEDLINE]Related articlesFree article

Differential representation of sunflower ESTs in enriched organ-specific cDNA libraries in a small scale sequencing project.

Fernández P, Paniego N, Lew S, Hopp HE, Heinz RA.

BMC Genomics. 2003 Sep 30;4(1):40.PMID: 14519210 [PubMed - indexed for MEDLINE]Related articlesFree article

Combining SSH and cDNA microarrays for rapid identification of differentially expressed genes.

Yang GP, Ross DT, Kuang WW, Brown PO, Weigel RJ.

Nucleic Acids Res. 1999 Mar 15;27(6):1517-23.PMID: 10037815 [PubMed - indexed for MEDLINE]Related articlesFree article

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.PMID: 16551369 [PubMed - indexed for MEDLINE]Related articlesFree article

Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays.

Yuen T, Wurmbach E, Pfeffer RL, Ebersole BJ, Sealfon SC.

Nucleic Acids Res. 2002 May 15;30(10):e48.PMID: 12000853 [PubMed - indexed for MEDLINE]Related articlesFree article

Negative subtraction hybridization: an efficient method to isolate large numbers of condition-specific cDNAs.

Ray A, Macwana S, Ayoubi P, Hall LT, Prade R, Mort AJ.

BMC Genomics. 2004 Mar 29;5(1):22.PMID: 15050035 [PubMed - indexed for MEDLINE]Related articlesFree article

cDNA amplification by SMART-PCR and suppression subtractive hybridization (SSH)-PCR.

Hillmann A, Dunne E, Kenny D.

Methods Mol Biol. 2009;496:223-43. Review.PMID: 18839114 [PubMed - indexed for MEDLINE]Related articles

Cascades of transcriptional induction during dendritic cell maturation revealed by genome-wide expression analysis.

Türeci O, Bian H, Nestle FO, Raddrizzani L, Rosinski JA, Tassis A, Hilton H, Walstead M, Sahin U, Hammer J.

FASEB J. 2003 May;17(8):836-47.PMID: 12724343 [PubMed - indexed for MEDLINE]Related articlesFree article

Screening of cDNA libraries on glass slide microarrays.

Berger DK, Crampton BG, Hein I, Vos W.

Methods Mol Biol. 2007;382:177-203.PMID: 18220232 [PubMed - indexed for MEDLINE]Related articles

Development of a cDNA microarray of zebra mussel (Dreissena polymorpha) foot and its use in understanding the early stage of underwater adhesion.

Xu W, Faisal M.

Gene. 2009 May 1;436(1-2):71-80. Epub 2009 Jan 23.PMID: 19393183 [PubMed - indexed for MEDLINE]Related articles

[The methods of identifying differences in mRNA expression]

Huang W, Fang XD, Zhao WM, Lin QF.

Sheng Wu Gong Cheng Xue Bao. 2002 Jul;18(4):521-4. Review. Chinese. PMID: 12385257 [PubMed - indexed for MEDLINE]Related articles

Cross-species hybridisation of human and bovine orthologous genes on high density cDNA microarrays.

Adjaye J, Herwig R, Herrmann D, Wruck W, Benkahla A, Brink TC, Nowak M, Carnwath JW, Hultschig C, Niemann H, Lehrach H.

BMC Genomics. 2004 Oct 28;5(1):83.PMID: 15511299 [PubMed - indexed for MEDLINE]Related articlesFree article