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    Results: 1 to 20 of 139

    1.

    Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models.

    Mahony S, McInerney JO, Smith TJ, Golden A.

    BMC Bioinformatics. 2004 Mar 5;5:23.PMID: 15070404 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.

    Bocs S, Danchin A, Médigue C.

    BMC Bioinformatics. 2002;3:5. Epub 2002 Feb 5.PMID: 11879526 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

    Besemer J, Lomsadze A, Borodovsky M.

    Nucleic Acids Res. 2001 Jun 15;29(12):2607-18.PMID: 11410670 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]

    Zhang DL, Ji L, Li YD.

    Yi Chuan Xue Bao. 2004 May;31(5):431-43. Chinese. PMID: 15478601 [PubMed - indexed for MEDLINE]Related articles

    5.

    Automatic annotation of eukaryotic genes, pseudogenes and promoters.

    Solovyev V, Kosarev P, Seledsov I, Vorobyev D.

    Genome Biol. 2006;7 Suppl 1:S10.1-12. Epub 2006 Aug 7.PMID: 16925832 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Large-scale, multi-genome analysis of alternate open reading frames in bacteria and archaea.

    Veloso F, Riadi G, Aliaga D, Lieph R, Holmes DS.

    OMICS. 2005 Spring;9(1):91-105.PMID: 15805780 [PubMed - indexed for MEDLINE]Related articles

    7.

    MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes.

    Zhu H, Hu GQ, Yang YF, Wang J, She ZS.

    BMC Bioinformatics. 2007 Mar 16;8:97.PMID: 17367537 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes.

    Guo FB, Ou HY, Zhang CT.

    Nucleic Acids Res. 2003 Mar 15;31(6):1780-9.PMID: 12626720 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes.

    Wan XF, Xu D, Kleinhofs A, Zhou J.

    BMC Evol Biol. 2004 Jun 28;4:19.PMID: 15222899 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    JIGSAW: integration of multiple sources of evidence for gene prediction.

    Allen JE, Salzberg SL.

    Bioinformatics. 2005 Sep 15;21(18):3596-603. Epub 2005 Aug 2.PMID: 16076884 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes.

    Shmatkov AM, Melikyan AA, Chernousko FL, Borodovsky M.

    Bioinformatics. 1999 Nov;15(11):874-86.PMID: 10743554 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    How to interpret an anonymous bacterial genome: machine learning approach to gene identification.

    Hayes WS, Borodovsky M.

    Genome Res. 1998 Nov;8(11):1154-71.PMID: 9847079 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance.

    Larsen TS, Krogh A.

    BMC Bioinformatics. 2003 Jun 3;4:21. Epub 2003 Jun 3.PMID: 12783628 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

    Flicek P, Keibler E, Hu P, Korf I, Brent MR.

    Genome Res. 2003 Jan;13(1):46-54.PMID: 12529305 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Analysis of codon usage patterns of bacterial genomes using the self-organizing map.

    Wang HC, Badger J, Kearney P, Li M.

    Mol Biol Evol. 2001 May;18(5):792-800.PMID: 11319263 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    MetaGene: prokaryotic gene finding from environmental genome shotgun sequences.

    Noguchi H, Park J, Takagi T.

    Nucleic Acids Res. 2006;34(19):5623-30. Epub 2006 Oct 5.PMID: 17028096 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    CodonO: codon usage bias analysis within and across genomes.

    Angellotti MC, Bhuiyan SB, Chen G, Wan XF.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W132-6. Epub 2007 May 30.PMID: 17537810 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Efficient decoding algorithms for generalized hidden Markov model gene finders.

    Majoros WH, Pertea M, Delcher AL, Salzberg SL.

    BMC Bioinformatics. 2005 Jan 24;6:16.PMID: 15667658 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Prokaryotic gene prediction using GeneMark and GeneMark.hmm.

    Borodovsky M, Mills R, Besemer J, Lomsadze A.

    Curr Protoc Bioinformatics. 2003 May;Chapter 4:Unit4.5.PMID: 18428700 [PubMed - indexed for MEDLINE]Related articles

    20.

    Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa.

    Doddapaneni H, Yao J, Lin H, Walker MA, Civerolo EL.

    BMC Genomics. 2006 Sep 1;7:225.PMID: 16948851 [PubMed - indexed for MEDLINE]Related articlesFree article

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