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Taverner NV, Smith JC, Wardle FC.

Genome Biol. 2004;5(3):210. Epub 2004 Feb 27. Review.

Kim J, Bhinge AA, Morgan XC, Iyer VR.

Nat Methods. 2005 Jan;2(1):47-53. Epub 2004 Dec 21.

Legube G, McWeeney SK, Lercher MJ, Akhtar A.

Genes Dev. 2006 Apr 1;20(7):871-83. Epub 2006 Mar 17.

Nagaraj VH, O'Flanagan RA, Bruning AR, Mathias JR, Vershon AK, Sengupta AM.

BMC Genomics. 2004 Aug 26;5(1):59.

Trinklein ND, Chen WC, Kingston RE, Myers RM.

Cell Stress Chaperones. 2004 Mar;9(1):21-8.

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Hum Mol Genet. 2005 Nov 15;14(22):3435-47. Epub 2005 Oct 12.

Vega VB, Bangarusamy DK, Miller LD, Liu ET, Lin CY.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W257-60.

Chen Y, Blackwell TW, Chen J, Gao J, Lee AW, States DJ.

PLoS Comput Biol. 2007 Apr 6;3(4):e63.

Impey S, McCorkle SR, Cha-Molstad H, Dwyer JM, Yochum GS, Boss JM, McWeeney S, Dunn JJ, Mandel G, Goodman RH.

Cell. 2004 Dec 29;119(7):1041-54.

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J Mol Biol. 2008 Oct 31;383(1):10-23. Epub 2008 Aug 7.

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In Silico Biol. 2006;6(6):531-44.

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Genome Res. 2008 Nov;18(11):1752-62. Epub 2008 Aug 5.

Merkulova TI, Oshchepkov DY, Ignatieva EV, Ananko EA, Levitsky VG, Vasiliev GV, Klimova NV, Merkulov VM, Kolchanov NA.

Biochemistry (Mosc). 2007 Nov;72(11):1187-93. Review.

Vallania F, Schiavone D, Dewilde S, Pupo E, Garbay S, Calogero R, Pontoglio M, Provero P, Poli V.

Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5117-22. Epub 2009 Mar 12.

Medina PP, Carretero J, Ballestar E, Angulo B, Lopez-Rios F, Esteller M, Sanchez-Cespedes M.

Hum Mol Genet. 2005 Apr 1;14(7):973-82. Epub 2005 Feb 24.

Yan B, Yang X, Lee TL, Friedman J, Tang J, Van Waes C, Chen Z.

Genome Biol. 2007;8(5):R78.

Chau BN, Diaz RL, Saunders MA, Cheng C, Chang AN, Warrener P, Bradshaw J, Linsley PS, Cleary MA.

Cancer Res. 2009 Feb 15;69(4):1368-74. Epub 2009 Feb 3.

Johnson DS, Mortazavi A, Myers RM, Wold B.

Science. 2007 Jun 8;316(5830):1497-502. Epub 2007 May 31.

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Bioinformatics. 2008 Jun 1;24(11):1325-31. Epub 2008 Apr 21. Review.

Birkaya B, Ortt K, Sinha S.

BMC Mol Biol. 2007 May 23;8:43.