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    Results: 1 to 20 of 332

    1.

    An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results.

    Stanislaus R, Jiang LH, Swartz M, Arthur J, Almeida JS.

    BMC Bioinformatics. 2004 Jan 29;5:9.PMID: 15005801 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    AGML Central: web based gel proteomic infrastructure.

    Stanislaus R, Chen C, Franklin J, Arthur J, Almeida JS.

    Bioinformatics. 2005 May 1;21(9):1754-7. Epub 2005 Jan 12.PMID: 15647304 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML database--Xindice.

    Li F, Li M, Xiao Z, Zhang P, Li J, Chen Z.

    BMC Bioinformatics. 2006 Jan 11;7:13.PMID: 16403238 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    A common open representation of mass spectrometry data and its application to proteomics research.

    Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R.

    Nat Biotechnol. 2004 Nov;22(11):1459-66.PMID: 15529173 [PubMed - indexed for MEDLINE]Related articles

    5.

    What is mzXML good for?

    Lin SM, Zhu L, Winter AQ, Sasinowski M, Kibbe WA.

    Expert Rev Proteomics. 2005 Dec;2(6):839-45. Review.PMID: 16307524 [PubMed - indexed for MEDLINE]Related articles

    6.

    Two-dimensional electrophoretic profiling of normal human kidney glomerulus proteome and construction of an extensible markup language (XML)-based database.

    Yoshida Y, Miyazaki K, Kamiie J, Sato M, Okuizumi S, Kenmochi A, Kamijo K, Nabetani T, Tsugita A, Xu B, Zhang Y, Yaoita E, Osawa T, Yamamoto T.

    Proteomics. 2005 Mar;5(4):1083-96.PMID: 15668994 [PubMed - indexed for MEDLINE]Related articles

    7.

    A platform to standardize, store, and visualize proteomics experimental data.

    Zheng G, Li H, Wang C, Sheng Q, Fan H, Yang S, Liu B, Dai J, Zeng R, Xie L.

    Acta Biochim Biophys Sin (Shanghai). 2009 Apr;41(4):273-9.PMID: 19352541 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow.

    Morisawa H, Hirota M, Toda T.

    BMC Bioinformatics. 2006 Oct 4;7:430.PMID: 17018156 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.

    Allmer J, Kuhlgert S, Hippler M.

    BMC Bioinformatics. 2008 Jul 7;9:302.PMID: 18605993 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    XML schemas for common bioinformatic data types and their application in workflow systems.

    Seibel PN, Krüger J, Hartmeier S, Schwarzer K, Löwenthal K, Mersch H, Dandekar T, Giegerich R.

    BMC Bioinformatics. 2006 Nov 6;7:490.PMID: 17087823 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    From XML to RDF: how semantic web technologies will change the design of 'omic' standards.

    Wang X, Gorlitsky R, Almeida JS.

    Nat Biotechnol. 2005 Sep;23(9):1099-103.PMID: 16151403 [PubMed - indexed for MEDLINE]Related articles

    12.

    Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.

    Garcia Castro A, Thoraval S, Garcia LJ, Ragan MA.

    BMC Bioinformatics. 2005 Apr 7;6:87.PMID: 15813976 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    2DDB - a bioinformatics solution for analysis of quantitative proteomics data.

    Malmström L, Marko-Varga G, Westergren-Thorsson G, Laurell T, Malmström J.

    BMC Bioinformatics. 2006 Mar 20;7:158.PMID: 16549013 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Common interchange standards for proteomics data: Public availability of tools and schema.

    Orchard S, Hermjakob H, Julian RK Jr, Runte K, Sherman D, Wojcik J, Zhu W, Apweiler R.

    Proteomics. 2004 Feb;4(2):490-1.PMID: 14760721 [PubMed - indexed for MEDLINE]Related articles

    15.

    The UAB Proteomics Database.

    Hill A, Kim H.

    Bioinformatics. 2003 Nov 1;19(16):2149-51.PMID: 14594723 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Proteome informatics I: bioinformatics tools for processing experimental data.

    Palagi PM, Hernandez P, Walther D, Appel RD.

    Proteomics. 2006 Oct;6(20):5435-44. Review.PMID: 16991191 [PubMed - indexed for MEDLINE]Related articles

    17.

    An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis.

    Stanislaus R, Arthur JM, Rajagopalan B, Moerschell R, McGlothlen B, Almeida JS.

    BMC Bioinformatics. 2008 Jan 7;9:4.PMID: 18179696 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    mspire: mass spectrometry proteomics in Ruby.

    Prince JT, Marcotte EM.

    Bioinformatics. 2008 Dec 1;24(23):2796-7. Epub 2008 Oct 16.PMID: 18930952 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A web services choreography scenario for interoperating bioinformatics applications.

    de Knikker R, Guo Y, Li JL, Kwan AK, Yip KY, Cheung DW, Cheung KH.

    BMC Bioinformatics. 2004 Mar 10;5:25.PMID: 15113410 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Integration of gel-based proteome data with pProRep.

    Laukens K, Matthiesen R, Lemière F, Esmans E, Onckelen HV, Jensen ON, Witters E.

    Bioinformatics. 2006 Nov 15;22(22):2838-40. Epub 2006 Oct 10.PMID: 17032679 [PubMed - indexed for MEDLINE]Related articlesFree article

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