PubMed

GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies.

Zhang B, Schmoyer D, Kirov S, Snoddy J.

BMC Bioinformatics. 2004 Feb 18;5:16.PMID: 14975175 [PubMed - indexed for MEDLINE]Related articlesFree article

WebGestalt: an integrated system for exploring gene sets in various biological contexts.

Zhang B, Kirov S, Snoddy J.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W741-8.PMID: 15980575 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene Class expression: analysis tool of Gene Ontology terms with gene expression data.

Pereira GS, Brandão RM, Giuliatti S, Zago MA, Silva WA Jr.

Genet Mol Res. 2006 Mar 31;5(1):108-14.PMID: 16755502 [PubMed - indexed for MEDLINE]Related articlesFree article

GObar: a gene ontology based analysis and visualization tool for gene sets.

Lee JS, Katari G, Sachidanandam R.

BMC Bioinformatics. 2005 Jul 25;6:189.PMID: 16042800 [PubMed - indexed for MEDLINE]Related articlesFree article

Visualization and analysis of microarray and gene ontology data with treemaps.

Baehrecke EH, Dang N, Babaria K, Shneiderman B.

BMC Bioinformatics. 2004 Jun 28;5:84.PMID: 15222902 [PubMed - indexed for MEDLINE]Related articlesFree article

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.PMID: 15661078 [PubMed - indexed for MEDLINE]Related articlesFree article

A web services choreography scenario for interoperating bioinformatics applications.

de Knikker R, Guo Y, Li JL, Kwan AK, Yip KY, Cheung DW, Cheung KH.

BMC Bioinformatics. 2004 Mar 10;5:25.PMID: 15113410 [PubMed - indexed for MEDLINE]Related articlesFree article

The Gene Set Builder: collation, curation, and distribution of sets of genes.

Yusuf D, Lim JS, Wasserman WW.

BMC Bioinformatics. 2005 Dec 21;6:305.PMID: 16371163 [PubMed - indexed for MEDLINE]Related articlesFree article

A web based resource characterizing the zebrafish developmental profile of over 16,000 transcripts.

Ouyang M, Garnett AT, Han TM, Hama K, Lee A, Deng Y, Lee N, Liu HY, Amacher SL, Farber SA, Ho SY.

Gene Expr Patterns. 2008 Feb;8(3):171-80. Epub 2007 Nov 7.PMID: 18068546 [PubMed - indexed for MEDLINE]Related articlesFree article

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

Usadel B, Nagel A, Steinhauser D, Gibon Y, Bläsing OE, Redestig H, Sreenivasulu N, Krall L, Hannah MA, Poree F, Fernie AR, Stitt M.

BMC Bioinformatics. 2006 Dec 18;7:535.PMID: 17176458 [PubMed - indexed for MEDLINE]Related articlesFree article

High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).

Zeeberg BR, Qin H, Narasimhan S, Sunshine M, Cao H, Kane DW, Reimers M, Stephens RM, Bryant D, Burt SK, Elnekave E, Hari DM, Wynn TA, Cunningham-Rundles C, Stewart DM, Nelson D, Weinstein JN.

BMC Bioinformatics. 2005 Jul 5;6:168.PMID: 15998470 [PubMed - indexed for MEDLINE]Related articlesFree article

PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.

Pan D, Sun N, Cheung KH, Guan Z, Ma L, Holford M, Deng X, Zhao H.

BMC Bioinformatics. 2003 Nov 7;4:56.PMID: 14604444 [PubMed - indexed for MEDLINE]Related articlesFree article

Handling multiple testing while interpreting microarrays with the Gene Ontology Database.

Osier MV, Zhao H, Cheung KH.

BMC Bioinformatics. 2004 Sep 6;5:124.PMID: 15350198 [PubMed - indexed for MEDLINE]Related articlesFree article

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.

Menten B, Pattyn F, De Preter K, Robbrecht P, Michels E, Buysse K, Mortier G, De Paepe A, van Vooren S, Vermeesch J, Moreau Y, De Moor B, Vermeulen S, Speleman F, Vandesompele J.

BMC Bioinformatics. 2005 May 23;6:124.PMID: 15910681 [PubMed - indexed for MEDLINE]Related articlesFree article

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.PMID: 16030072 [PubMed - indexed for MEDLINE]Related articlesFree article

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.PMID: 17062145 [PubMed - indexed for MEDLINE]Related articlesFree article

GoMiner: a resource for biological interpretation of genomic and proteomic data.

Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, Narasimhan S, Kane DW, Reinhold WC, Lababidi S, Bussey KJ, Riss J, Barrett JC, Weinstein JN.

Genome Biol. 2003;4(4):R28. Epub 2003 Mar 25.PMID: 12702209 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayQuest: a web resource for the analysis of DNA microarray data.

Argraves GL, Jani S, Barth JL, Argraves WS.

BMC Bioinformatics. 2005 Dec 1;6:287.PMID: 16321157 [PubMed - indexed for MEDLINE]Related articlesFree article

RACE: Remote Analysis Computation for gene Expression data.

Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W638-43.PMID: 15980552 [PubMed - indexed for MEDLINE]Related articlesFree article

GECKO: a complete large-scale gene expression analysis platform.

Theilhaber J, Ulyanov A, Malanthara A, Cole J, Xu D, Nahf R, Heuer M, Brockel C, Bushnell S.

BMC Bioinformatics. 2004 Dec 10;5:195.PMID: 15588317 [PubMed - indexed for MEDLINE]Related articlesFree article