Warning: The NCBI web site requires JavaScript to function. more...
In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection.
Marchal K, De Keersmaecker S, Monsieurs P, van Boxel N, Lemmens K, Thijs G, Vanderleyden J, De Moor B.
Genome Biol. 2004;5(2):R9. Epub 2004 Jan 29.
Related citations
PhoP-PhoQ activates transcription of pmrAB, encoding a two-component regulatory system involved in Salmonella typhimurium antimicrobial peptide resistance.
Gunn JS, Miller SI.
J Bacteriol. 1996 Dec;178(23):6857-64.
Genome-wide analysis of the PreA/PreB (QseB/QseC) regulon of Salmonella enterica serovar Typhimurium.
Merighi M, Septer AN, Carroll-Portillo A, Bhatiya A, Porwollik S, McClelland M, Gunn JS.
BMC Microbiol. 2009 Feb 23;9:42.
The FxRxHrS motif: a conserved region essential for DNA binding of the VirR response regulator from Clostridium perfringens.
McGowan S, Lucet IS, Cheung JK, Awad MM, Whisstock JC, Rood JI.
J Mol Biol. 2002 Oct 4;322(5):997-1011.
Spontaneous pmrA mutants of Salmonella typhimurium LT2 define a new two-component regulatory system with a possible role in virulence.
Roland KL, Martin LE, Esther CR, Spitznagel JK.
J Bacteriol. 1993 Jul;175(13):4154-64.
The Salmonella PmrAB regulon: lipopolysaccharide modifications, antimicrobial peptide resistance and more.
Gunn JS.
Trends Microbiol. 2008 Jun;16(6):284-90. Epub 2008 May 6. Review.
Interaction of the Salmonella typhimurium transcription and virulence factor SlyA with target DNA and identification of members of the SlyA regulon.
Stapleton MR, Norte VA, Read RC, Green J.
J Biol Chem. 2002 May 17;277(20):17630-7. Epub 2002 Mar 6.
Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including hilA itself.
De Keersmaecker SC, Marchal K, Verhoeven TL, Engelen K, Vanderleyden J, Detweiler CS.
J Bacteriol. 2005 Jul;187(13):4381-91.
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Siddharthan R, Siggia ED, van Nimwegen E.
PLoS Comput Biol. 2005 Dec;1(7):e67. Epub 2005 Dec 9.
Identification and functional analysis of Salmonella enterica serovar Typhimurium PmrA-regulated genes.
Tamayo R, Prouty AM, Gunn JS.
FEMS Immunol Med Microbiol. 2005 Feb 1;43(2):249-58.
Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes.
McCue L, Thompson W, Carmack C, Ryan MP, Liu JS, Derbyshire V, Lawrence CE.
Nucleic Acids Res. 2001 Feb 1;29(3):774-82.
A pair of highly conserved two-component systems participates in the regulation of the hypervariable FIR proteins in different Legionella species.
Feldman M, Segal G.
J Bacteriol. 2007 May;189(9):3382-91. Epub 2007 Mar 2.
Genetic and functional analysis of a PmrA-PmrB-regulated locus necessary for lipopolysaccharide modification, antimicrobial peptide resistance, and oral virulence of Salmonella enterica serovar typhimurium.
Gunn JS, Ryan SS, Van Velkinburgh JC, Ernst RK, Miller SI.
Infect Immun. 2000 Nov;68(11):6139-46.
Identification of the sigmaE regulon of Salmonella enterica serovar Typhimurium.
Skovierova H, Rowley G, Rezuchova B, Homerova D, Lewis C, Roberts M, Kormanec J.
Microbiology. 2006 May;152(Pt 5):1347-59.
Identification of the lipopolysaccharide modifications controlled by the Salmonella PmrA/PmrB system mediating resistance to Fe(III) and Al(III).
Nishino K, Hsu FF, Turk J, Cromie MJ, Wösten MM, Groisman EA.
Mol Microbiol. 2006 Aug;61(3):645-54. Epub 2006 Jun 27.
Enhancer-dependent transcription in Salmonella enterica Typhimurium: new members of the sigmaN regulon inferred from protein sequence homology and predicted promoter sites.
Studholme DJ.
J Mol Microbiol Biotechnol. 2002 Jul;4(4):367-74. Review.
Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium.
Monsieurs P, De Keersmaecker S, Navarre WW, Bader MW, De Smet F, McClelland M, Fang FC, De Moor B, Vanderleyden J, Marchal K.
J Mol Evol. 2005 Apr;60(4):462-74.
Molecular characterization of the PmrA regulon.
Wösten MM, Groisman EA.
J Biol Chem. 1999 Sep 17;274(38):27185-90.
PCR amplification of the Salmonella typhimurium fimY gene sequence to detect the Salmonella species.
Yeh KS, Chen TH, Liao CW, Chang CS, Lo HC.
Int J Food Microbiol. 2002 Oct 25;78(3):227-34.
More robust detection of motifs in coexpressed genes by using phylogenetic information.
Monsieurs P, Thijs G, Fadda AA, De Keersmaecker SC, Vanderleyden J, De Moor B, Marchal K.
BMC Bioinformatics. 2006 Mar 20;7:160.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on