Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

    Results: 1 to 20 of 1329

    1.

    A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

    Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

    Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

    PMID:
    14759257
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The COG database: an updated version includes eukaryotes.

    Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

    BMC Bioinformatics. 2003 Sep 11;4:41. Epub 2003 Sep 11.

    PMID:
    12969510
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    The role of lineage-specific gene family expansion in the evolution of eukaryotes.

    Lespinet O, Wolf YI, Koonin EV, Aravind L.

    Genome Res. 2002 Jul;12(7):1048-59.

    PMID:
    12097341
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution.

    Krylov DM, Wolf YI, Rogozin IB, Koonin EV.

    Genome Res. 2003 Oct;13(10):2229-35.

    PMID:
    14525925
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.

    Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV.

    Genome Res. 2001 Mar;11(3):356-72.

    PMID:
    11230160
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    Evolutionary genomics of nucleo-cytoplasmic large DNA viruses.

    Iyer LM, Balaji S, Koonin EV, Aravind L.

    Virus Res. 2006 Apr;117(1):156-84. Epub 2006 Feb 21. Review.

    PMID:
    16494962
    [PubMed - indexed for MEDLINE]
    9.

    Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals.

    Danchin EG, Gouret P, Pontarotti P.

    BMC Evol Biol. 2006 Jan 18;6:5.

    PMID:
    16420703
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Genome trees constructed using five different approaches suggest new major bacterial clades.

    Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

    BMC Evol Biol. 2001 Oct 20;1:8.

    PMID:
    11734060
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

    Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV.

    Genome Res. 1999 Jul;9(7):608-28.

    PMID:
    10413400
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution.

    Haerty W, Artieri C, Khezri N, Singh RS, Gupta BP.

    BMC Genomics. 2008 Aug 27;9:399.

    PMID:
    18752680
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Evolutionary sequence analysis of complete eukaryote genomes.

    Blair JE, Shah P, Hedges SB.

    BMC Bioinformatics. 2005 Mar 11;6:53.

    PMID:
    15762985
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

    Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

    Biol Direct. 2007 Nov 27;2:33.

    PMID:
    18042280
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell.

    Makarova KS, Wolf YI, Mekhedov SL, Mirkin BG, Koonin EV.

    Nucleic Acids Res. 2005 Aug 16;33(14):4626-38. Print 2005.

    PMID:
    16106042
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements.

    Makarova KS, Wolf YI, van der Oost J, Koonin EV.

    Biol Direct. 2009 Aug 25;4:29.

    PMID:
    19706170
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Unique genes in plants: specificities and conserved features throughout evolution.

    Armisén D, Lecharny A, Aubourg S.

    BMC Evol Biol. 2008 Oct 10;8:280.

    PMID:
    18847470
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

    Koonin EV, Mushegian AR, Galperin MY, Walker DR.

    Mol Microbiol. 1997 Aug;25(4):619-37.

    PMID:
    9379893
    [PubMed - indexed for MEDLINE]
    20.

    Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.

    Pandey R, Müller A, Napoli CA, Selinger DA, Pikaard CS, Richards EJ, Bender J, Mount DW, Jorgensen RA.

    Nucleic Acids Res. 2002 Dec 1;30(23):5036-55.

    PMID:
    12466527
    [PubMed - indexed for MEDLINE]
    Free PMC Article

      Display Settings:

      Format
      Items per page
      Sort by

      Send to:

      Choose Destination

      Supplemental Content

      Find related data

      Write to the Help Desk