Warning: The NCBI web site requires JavaScript to function. more...
Computational prediction of transcription-factor binding site locations.
Bulyk ML.
Genome Biol. 2003;5(1):201. Epub 2003 Dec 23. Review.
Related citations
Reliable prediction of transcription factor binding sites by phylogenetic verification.
Li X, Zhong S, Wong WH.
Proc Natl Acad Sci U S A. 2005 Nov 22;102(47):16945-50. Epub 2005 Nov 14.
Integrating multiple evidence sources to predict transcription factor binding in the human genome.
Ernst J, Plasterer HL, Simon I, Bar-Joseph Z.
Genome Res. 2010 Apr;20(4):526-36. Epub 2010 Mar 10.
Combined analysis of expression data and transcription factor binding sites in the yeast genome.
Nagaraj VH, O'Flanagan RA, Bruning AR, Mathias JR, Vershon AK, Sengupta AM.
BMC Genomics. 2004 Aug 26;5(1):59.
Computational discovery of transcriptional regulatory rules.
Pham TH, Clemente JC, Satou K, Ho TB.
Bioinformatics. 2005 Sep 1;21 Suppl 2:ii101-7.
Computational approaches to finding and analyzing cis-regulatory elements.
Brown CT.
Methods Cell Biol. 2008;87:337-65. Review.
Ab initio prediction of transcription factor binding sites.
Liu LA, Bader JS.
Pac Symp Biocomput. 2007:484-95.
Combining experts in order to identify binding sites in yeast and mouse genomic data.
Robinson M, González Castellano C, Rezwan F, Adams R, Davey N, Rust A, Sun Y.
Neural Netw. 2008 Aug;21(6):856-61. Epub 2008 Aug 3.
OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif.
Drawid A, Gupta N, Nagaraj VH, Gélinas C, Sengupta AM.
BMC Bioinformatics. 2009 Jul 7;10:208.
Computational identification of combinatorial regulation and transcription factor binding sites.
Ryu T, Kim Y, Kim DW, Lee D.
Biotechnol Bioeng. 2007 Aug 15;97(6):1594-602.
A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
Bulyk ML, McGuire AM, Masuda N, Church GM.
Genome Res. 2004 Feb;14(2):201-8.
Integrating genomic data to predict transcription factor binding.
Holloway DT, Kon M, DeLisi C.
Genome Inform. 2005;16(1):83-94.
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE.
Genome Biol. 2004;5(9):R61. Epub 2004 Aug 20.
Computational approaches to identifying transcription factor binding sites in yeast genome.
Li H.
Methods Enzymol. 2002;350:484-95. No abstract available.
Recognition of interferon-inducible sites, promoters, and enhancers.
Ananko EA, Kondrakhin YV, Merkulova TI, Kolchanov NA.
BMC Bioinformatics. 2007 Feb 19;8:56.
[Computational predictions of transcription factor binding sites].
Kawaji H.
Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2877-81. Review. Japanese. No abstract available.
Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques.
Elnitski L, Jin VX, Farnham PJ, Jones SJ.
Genome Res. 2006 Dec;16(12):1455-64. Epub 2006 Oct 19. Review.
Eukaryotic transcription factor binding sites--modeling and integrative search methods.
Hannenhalli S.
Bioinformatics. 2008 Jun 1;24(11):1325-31. Epub 2008 Apr 21. Review.
Predicting transcription factor binding sites using local over-representation and comparative genomics.
Defrance M, Touzet H.
BMC Bioinformatics. 2006 Aug 31;7:396.
Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs.
Corà D, Di Cunto F, Provero P, Silengo L, Caselle M.
BMC Bioinformatics. 2004 May 11;5:57.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on