PubMed

SAGE is far more sensitive than EST for detecting low-abundance transcripts.

Sun M, Zhou G, Lee S, Chen J, Shi RZ, Wang SM.

BMC Genomics. 2004 Jan 5;5(1):1.PMID: 14704093 [PubMed - indexed for MEDLINE]Related articlesFree article

Pan-genome isolation of low abundance transcripts using SAGE tag.

Kim YC, Jung YC, Xuan Z, Dong H, Zhang MQ, Wang SM.

FEBS Lett. 2006 Dec 11;580(28-29):6721-9. Epub 2006 Nov 14.PMID: 17113583 [PubMed - indexed for MEDLINE]Related articlesFree article

Can transcriptome size be estimated from SAGE catalogs?

Stern MD, Anisimov SV, Boheler KR.

Bioinformatics. 2003 Mar 1;19(4):443-8.PMID: 12611798 [PubMed - indexed for MEDLINE]Related articlesFree article

The new role of SAGE in gene discovery.

Boheler KR, Stern MD.

Trends Biotechnol. 2003 Feb;21(2):55-7; discussion 57-8. Review.PMID: 12573851 [PubMed - indexed for MEDLINE]Related articles

Validation of oligoarrays for quantitative exploration of the transcriptome.

Nygaard V, Liu F, Holden M, Kuo WP, Trimarchi J, Ohno-Machado L, Cepko CL, Frigessi A, Glad IK, Wiel MA, Hovig E, Lyng H.

BMC Genomics. 2008 May 30;9:258.PMID: 18513391 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags.

Chen J, Sun M, Lee S, Zhou G, Rowley JD, Wang SM.

Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12257-62. Epub 2002 Sep 4.PMID: 12213963 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals.

Knoll-Gellida A, André M, Gattegno T, Forgue J, Admon A, Babin PJ.

BMC Genomics. 2006 Mar 9;7:46.PMID: 16526958 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription.

Poole RL, Barker GL, Werner K, Biggi GF, Coghill J, Gibbings JG, Berry S, Dunwell JM, Edwards KJ.

BMC Genomics. 2008 Oct 10;9:475.PMID: 18847483 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcript profiling by 3'-untranslated region sequencing resolves expression of gene families.

Eveland AL, McCarty DR, Koch KE.

Plant Physiol. 2008 Jan;146(1):32-44. Epub 2007 Nov 16.PMID: 18024554 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression.

Quéré R, Manchon L, Lejeune M, Clément O, Pierrat F, Bonafoux B, Commes T, Piquemal D, Marti J.

Nucleic Acids Res. 2004 Nov 23;32(20):e163.PMID: 15561998 [PubMed - indexed for MEDLINE]Related articlesFree article

Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods.

Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, Wing R, Stahlberg E, Couglan S, Haudenschild CD, Dean R, Nahm BH, Meyers BC, Wang GL.

BMC Genomics. 2006 Dec 8;7:310.PMID: 17156450 [PubMed - indexed for MEDLINE]Related articlesFree article

Small amplified RNA-SAGE.

Vilain C, Vassart G.

Methods Mol Biol. 2004;258:135-52.PMID: 14970461 [PubMed - indexed for MEDLINE]Related articles

Deep analysis of cellular transcriptomes - LongSAGE versus classic MPSS.

Hene L, Sreenu VB, Vuong MT, Abidi SH, Sutton JK, Rowland-Jones SL, Davis SJ, Evans EJ.

BMC Genomics. 2007 Sep 24;8:333.PMID: 17892551 [PubMed - indexed for MEDLINE]Related articlesFree article

A quantitative view of the transcriptome of Schistosoma mansoni adult-worms using SAGE.

Ojopi EP, Oliveira PS, Nunes DN, Paquola A, DeMarco R, Gregório SP, Aires KA, Menck CF, Leite LC, Verjovski-Almeida S, Dias-Neto E.

BMC Genomics. 2007 Jun 21;8:186.PMID: 17584941 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical modeling of sequencing errors in SAGE libraries.

Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS, Scott HS, Speed TP.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i31-9.PMID: 15262778 [PubMed - indexed for MEDLINE]Related articlesFree article

Detecting novel low-abundant transcripts in Drosophila.

Lee S, Bao J, Zhou G, Shapiro J, Xu J, Shi RZ, Lu X, Clark T, Johnson D, Kim YC, Wing C, Tseng C, Sun M, Lin W, Wang J, Yang H, Wang J, Du W, Wu CI, Zhang X, Wang SM.

RNA. 2005 Jun;11(6):939-46.PMID: 15923377 [PubMed - indexed for MEDLINE]Related articlesFree article

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

Keime C, Damiola F, Mouchiroud D, Duret L, Gandrillon O.

BMC Bioinformatics. 2004 Oct 6;5:143.PMID: 15469608 [PubMed - indexed for MEDLINE]Related articlesFree article

Widespread distribution of antisense transcripts in the Plasmodium falciparum genome.

Gunasekera AM, Patankar S, Schug J, Eisen G, Kissinger J, Roos D, Wirth DF.

Mol Biochem Parasitol. 2004 Jul;136(1):35-42.PMID: 15138065 [PubMed - indexed for MEDLINE]Related articles

Amplification of high-quantity serial analysis of gene expression ditags and improvement of concatemer cloning efficiency.

Du Z, Scott AD, May GD.

Biotechniques. 2003 Jul;35(1):66-7, 70-2.PMID: 12866407 [PubMed - indexed for MEDLINE]Related articles

Analysis of SAGE data in human platelets: features of the transcriptome in an anucleate cell.

Dittrich M, Birschmann I, Pfrang J, Herterich S, Smolenski A, Walter U, Dandekar T.

Thromb Haemost. 2006 Apr;95(4):643-51.PMID: 16601835 [PubMed - indexed for MEDLINE]Related articles