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    Results: 1 to 20 of 144

    1.

    Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells.

    Lee JK, Bussey KJ, Gwadry FG, Reinhold W, Riddick G, Pelletier SL, Nishizuka S, Szakacs G, Annereau JP, Shankavaram U, Lababidi S, Smith LH, Gottesman MM, Weinstein JN.

    Genome Biol. 2003;4(12):R82. Epub 2003 Nov 25.

    PMID:
    14659019
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.

    Shankavaram UT, Reinhold WC, Nishizuka S, Major S, Morita D, Chary KK, Reimers MA, Scherf U, Kahn A, Dolginow D, Cossman J, Kaldjian EP, Scudiero DA, Petricoin E, Liotta L, Lee JK, Weinstein JN.

    Mol Cancer Ther. 2007 Mar;6(3):820-32. Epub 2007 Mar 5.

    PMID:
    17339364
    [PubMed - indexed for MEDLINE]
    Free Article
    3.

    Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.

    Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.

    BMC Bioinformatics. 2005 Apr 25;6:107.

    PMID:
    15850491
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Comparison of gene expression measurements from cDNA and 60-mer oligonucleotide microarrays.

    Zhu B, Ping G, Shinohara Y, Zhang Y, Baba Y.

    Genomics. 2005 Jun;85(6):657-65.

    PMID:
    15885493
    [PubMed - indexed for MEDLINE]
    5.

    Are data from different gene expression microarray platforms comparable?

    Järvinen AK, Hautaniemi S, Edgren H, Auvinen P, Saarela J, Kallioniemi OP, Monni O.

    Genomics. 2004 Jun;83(6):1164-8.

    PMID:
    15177569
    [PubMed - indexed for MEDLINE]
    6.

    Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

    Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

    BMC Genomics. 2006 Mar 21;7:59.

    PMID:
    16551369
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

    Culhane AC, Perrière G, Higgins DG.

    BMC Bioinformatics. 2003 Nov 21;4:59.

    PMID:
    14633289
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Determination of genes related to gastrointestinal tract origin cancer cells using a cDNA microarray.

    Kim TM, Jeong HJ, Seo MY, Kim SC, Cho G, Park CH, Kim TS, Park KH, Chung HC, Rha SY.

    Clin Cancer Res. 2005 Jan 1;11(1):79-86.

    PMID:
    15671531
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    Identifying superficial, muscle-invasive, and metastasizing transitional cell carcinoma of the bladder: use of cDNA array analysis of gene expression profiles.

    Modlich O, Prisack HB, Pitschke G, Ramp U, Ackermann R, Bojar H, Vögeli TA, Grimm MO.

    Clin Cancer Res. 2004 May 15;10(10):3410-21.

    PMID:
    15161696
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    The chemiluminescence based Ziplex automated workstation focus array reproduces ovarian cancer Affymetrix GeneChip expression profiles.

    Quinn MC, Wilson DJ, Young F, Dempsey AA, Arcand SL, Birch AH, Wojnarowicz PM, Provencher D, Mes-Masson AM, Englert D, Tonin PN.

    J Transl Med. 2009 Jul 6;7:55.

    PMID:
    19580657
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results.

    Millenaar FF, Okyere J, May ST, van Zanten M, Voesenek LA, Peeters AJ.

    BMC Bioinformatics. 2006 Mar 15;7:137.

    PMID:
    16539732
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.

    Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P.

    Nucleic Acids Res. 2005 Oct 19;33(18):5914-23. Print 2005.

    PMID:
    16237126
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Chemosensitivity profile of cancer cell lines and identification of genes determining chemosensitivity by an integrated bioinformatical approach using cDNA arrays.

    Nakatsu N, Yoshida Y, Yamazaki K, Nakamura T, Dan S, Fukui Y, Yamori T.

    Mol Cancer Ther. 2005 Mar;4(3):399-412.

    PMID:
    15767549
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips.

    van Ruissen F, Ruijter JM, Schaaf GJ, Asgharnegad L, Zwijnenburg DA, Kool M, Baas F.

    BMC Genomics. 2005 Jun 14;6:91.

    PMID:
    15955238
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Integrating global gene expression and radiation survival parameters across the 60 cell lines of the National Cancer Institute Anticancer Drug Screen.

    Amundson SA, Do KT, Vinikoor LC, Lee RA, Koch-Paiz CA, Ahn J, Reimers M, Chen Y, Scudiero DA, Weinstein JN, Trent JM, Bittner ML, Meltzer PS, Fornace AJ Jr.

    Cancer Res. 2008 Jan 15;68(2):415-24.

    PMID:
    18199535
    [PubMed - indexed for MEDLINE]
    Free Article
    17.

    Comparison of the latest commercial short and long oligonucleotide microarray technologies.

    de Reyniès A, Geromin D, Cayuela JM, Petel F, Dessen P, Sigaux F, Rickman DS.

    BMC Genomics. 2006 Mar 15;7:51.

    PMID:
    16539734
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes.

    Warnat P, Eils R, Brors B.

    BMC Bioinformatics. 2005 Nov 4;6:265.

    PMID:
    16271137
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Cross platform microarray analysis for robust identification of differentially expressed genes.

    Bosotti R, Locatelli G, Healy S, Scacheri E, Sartori L, Mercurio C, Calogero R, Isacchi A.

    BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S5.

    PMID:
    17430572
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples.

    Gyorffy B, Molnar B, Lage H, Szallasi Z, Eklund AC.

    PLoS One. 2009 May 21;4(5):e5645.

    PMID:
    19461970
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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