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Microarray analysis of gene expression during the cell cycle.

Cooper S, Shedden K.

Cell Chromosome. 2003 Sep 19;2(1):1.PMID: 14577836 [PubMed - as supplied by publisher]Related articlesFree article

Detecting biological associations between genes based on the theory of phase synchronization.

Kim CS, Riikonen P, Salakoski T.

Biosystems. 2008 May;92(2):99-113. Epub 2008 Jan 11.PMID: 18289772 [PubMed - indexed for MEDLINE]Related articles

Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods.

Shedden K, Cooper S.

Nucleic Acids Res. 2002 Jul 1;30(13):2920-9.PMID: 12087178 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying periodically expressed transcripts in microarray time series data.

Wichert S, Fokianos K, Strimmer K.

Bioinformatics. 2004 Jan 1;20(1):5-20.PMID: 14693803 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of cell-cycle-specific gene expression in human cells as determined by microarrays and double-thymidine block synchronization.

Shedden K, Cooper S.

Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4379-84. Epub 2002 Mar 19.PMID: 11904377 [PubMed - indexed for MEDLINE]Related articlesFree article

A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data.

Kim CS, Bae CS, Tcha HJ.

BMC Bioinformatics. 2008 Jan 28;9:56.PMID: 18221564 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of significant periodic genes in microarray gene expression data.

Chen J.

BMC Bioinformatics. 2005 Nov 30;6:286.PMID: 16318631 [PubMed - indexed for MEDLINE]Related articlesFree article

Rejoinder: whole-culture synchronization cannot, and does not, synchronize cells.

Cooper S.

Trends Biotechnol. 2004 Jun;22(6):274-6.PMID: 15158054 [PubMed - indexed for MEDLINE]Related articles

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.

Chou JW, Zhou T, Kaufmann WK, Paules RS, Bushel PR.

BMC Bioinformatics. 2007 Nov 2;8:427.PMID: 17980031 [PubMed - indexed for MEDLINE]Related articlesFree article

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.PMID: 16551369 [PubMed - indexed for MEDLINE]Related articlesFree article

Thymidine block does not synchronize L1210 mouse leukaemic cells: implications for cell cycle control, cell cycle analysis and whole-culture synchronization.

Cooper S, Chen KZ, Ravi S.

Cell Prolif. 2008 Feb;41(1):156-67.PMID: 18211291 [PubMed - indexed for MEDLINE]Related articles

Self-Organizing Maps with Statistical Phase Synchronization (SOMPS) for analyzing cell cycle-specific gene expression data.

Kim CS.

Stat Appl Genet Mol Biol. 2008;7(1):Article1. Epub 2008 Jan 15.PMID: 18241191 [PubMed - indexed for MEDLINE]Related articlesFree article

Tracking the herd: resynchronization analysis of cell-cycle gene expression data in Saccharomyces cerevisiae.

Qiu P, Jane Wang Z, Ray Liu KJ.

Conf Proc IEEE Eng Med Biol Soc. 2005;5:4826-9.PMID: 17281322 [PubMed - in process]Related articles

Comment on and reply to "Analysis of variation of amplitudes in cell cycle gene expression" by Liu, Gaido and Wolfinger: on the analysis of gene expression during the normal, eukaryotic, cell cycle.

Cooper S.

Theor Biol Med Model. 2005 Nov 18;2:47.PMID: 16297235 [PubMed - indexed for MEDLINE]Related articlesFree article

Reply: whole-culture synchronization - effective tools for cell cycle studies.

Spellman PT, Sherlock G.

Trends Biotechnol. 2004 Jun;22(6):270-3.PMID: 15158053 [PubMed - indexed for MEDLINE]Related articles

Microarray analyses of gene expression during the Tetrahymena thermophila life cycle.

Miao W, Xiong J, Bowen J, Wang W, Liu Y, Braguinets O, Grigull J, Pearlman RE, Orias E, Gorovsky MA.

PLoS One. 2009;4(2):e4429. Epub 2009 Feb 10.PMID: 19204800 [PubMed - indexed for MEDLINE]Related articlesFree article

Effects of DNA-targeted ionizing radiation produced by 5-[125I]iodo-2'-deoxyuridine on global gene expression in primary human cells.

Sokolov MV, Neumann RD, Panyutin IG.

BMC Genomics. 2007 Jun 26;8:192.PMID: 17594496 [PubMed - indexed for MEDLINE]Related articlesFree article

Systematic identification of cell cycle regulated transcription factors from microarray time series data.

Cheng C, Li LM.

BMC Genomics. 2008 Mar 3;9:116.PMID: 18315882 [PubMed - indexed for MEDLINE]Related articlesFree article

The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast.

Marguerat S, Jensen TS, de Lichtenberg U, Wilhelm BT, Jensen LJ, Bähler J.

Yeast. 2006 Mar;23(4):261-77.PMID: 16544289 [PubMed - indexed for MEDLINE]Related articlesFree article

Polynomial model approach for resynchronization analysis of cell-cycle gene expression data.

Qiu P, Wang ZJ, Liu KJ.

Bioinformatics. 2006 Apr 15;22(8):959-66. Epub 2006 Jan 24.PMID: 16434439 [PubMed - indexed for MEDLINE]Related articlesFree article