PubMed

The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD).

Killion PJ, Sherlock G, Iyer VR.

BMC Bioinformatics. 2003 Aug 20;4:32. Epub 2003 Aug 20.PMID: 12930545 [PubMed - indexed for MEDLINE]Related articlesFree article

Microarray data visualization and analysis with the Longhorn Array Database (LAD).

Killion PJ, Iyer VR.

Curr Protoc Bioinformatics. 2004 Dec;Chapter 7:Unit 7.10.PMID: 18428730 [PubMed - indexed for MEDLINE]Related articles

The Stanford Microarray Database accommodates additional microarray platforms and data formats.

Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM, Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D580-2.PMID: 15608265 [PubMed - indexed for MEDLINE]Related articlesFree article

The Stanford Microarray Database: implementation of new analysis tools and open source release of software.

Demeter J, Beauheim C, Gollub J, Hernandez-Boussard T, Jin H, Maier D, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G, Ball CA.

Nucleic Acids Res. 2007 Jan;35(Database issue):D766-70. Epub 2006 Dec 20.PMID: 17182626 [PubMed - indexed for MEDLINE]Related articlesFree article

The Stanford Microarray Database: data access and quality assessment tools.

Gollub J, Ball CA, Binkley G, Demeter J, Finkelstein DB, Hebert JM, Hernandez-Boussard T, Jin H, Kaloper M, Matese JC, Schroeder M, Brown PO, Botstein D, Sherlock G.

Nucleic Acids Res. 2003 Jan 1;31(1):94-6.PMID: 12519956 [PubMed - indexed for MEDLINE]Related articlesFree article

Implementation of GenePattern within the Stanford Microarray Database.

Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA.

Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. Epub 2008 Oct 25.PMID: 18953035 [PubMed - indexed for MEDLINE]Related articlesFree article

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26.PMID: 18201381 [PubMed - indexed for MEDLINE]Related articlesFree article

Importing MAGE-ML format microarray data into BioConductor.

Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B.

Bioinformatics. 2004 Dec 12;20(18):3641-2. Epub 2004 Jul 15.PMID: 15256416 [PubMed - indexed for MEDLINE]Related articlesFree article

MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.

Hermida L, Schaad O, Demougin P, Descombes P, Primig M.

BMC Bioinformatics. 2006 Apr 5;7:190.PMID: 16597336 [PubMed - indexed for MEDLINE]Related articlesFree article

A method of microarray data storage using array data type.

Tsoi LC, Zheng WJ.

Comput Biol Chem. 2007 Apr;31(2):143-7. Epub 2007 Jan 12.PMID: 17392028 [PubMed - indexed for MEDLINE]Related articlesFree article

GeneXplorer: an interactive web application for microarray data visualization and analysis.

Rees CA, Demeter J, Matese JC, Botstein D, Sherlock G.

BMC Bioinformatics. 2004 Oct 1;5:141.PMID: 15458579 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayQuest: a web resource for the analysis of DNA microarray data.

Argraves GL, Jani S, Barth JL, Argraves WS.

BMC Bioinformatics. 2005 Dec 1;6:287.PMID: 16321157 [PubMed - indexed for MEDLINE]Related articlesFree article

The ArrayExpress gene expression database: a software engineering and implementation perspective.

Sarkans U, Parkinson H, Lara GG, Oezcimen A, Sharma A, Abeygunawardena N, Contrino S, Holloway E, Rocca-Serra P, Mukherjee G, Shojatalab M, Kapushesky M, Sansone SA, Farne A, Rayner T, Brazma A.

Bioinformatics. 2005 Apr 15;21(8):1495-501. Epub 2004 Nov 25.PMID: 15564302 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.

Stokes TH, Torrance JT, Li H, Wang MD.

BMC Bioinformatics. 2008 May 28;9 Suppl 6:S18.PMID: 18541053 [PubMed - indexed for MEDLINE]Related articlesFree article

The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource.

Berman JJ, Datta M, Kajdacsy-Balla A, Melamed J, Orenstein J, Dobbin K, Patel A, Dhir R, Becich MJ.

BMC Bioinformatics. 2004 Feb 27;5:19.PMID: 15040818 [PubMed - indexed for MEDLINE]Related articlesFree article

BarleyExpress: a web-based submission tool for enriched microarray database annotations.

Tang X, Shen L, Dickerson JA.

Bioinformatics. 2005 Feb 1;21(3):399-401. Epub 2004 Sep 3.PMID: 15347571 [PubMed - indexed for MEDLINE]Related articlesFree article

MARS: microarray analysis, retrieval, and storage system.

Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z.

BMC Bioinformatics. 2005 Apr 18;6:101.PMID: 15836795 [PubMed - indexed for MEDLINE]Related articlesFree article

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

Zhu Y, Zhu Y, Xu W.

BMC Bioinformatics. 2008 Jan 24;9:46.PMID: 18218103 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.

Burgarella S, Cattaneo D, Pinciroli F, Masseroli M.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S6.PMID: 16351755 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayExpress: a public database of gene expression data at EBI.

Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M, Contrino S, Vilo J, Abeygunawardena N, Mukherjee G, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Sansone SA.

C R Biol. 2003 Oct-Nov;326(10-11):1075-8.PMID: 14744115 [PubMed - indexed for MEDLINE]Related articles