Warning: The NCBI web site requires JavaScript to function. more...
THoR: a tool for domain discovery and curation of multiple alignments.
Dickens NJ, Ponting CP.
Genome Biol. 2003;4(8):R52. Epub 2003 Jul 23.
Related citations
OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.
BMC Bioinformatics. 2003 Oct 10;4:47.
Identifying protein domains with the Pfam database.
Finn R, Griffiths-Jones S, Bateman A.
Curr Protoc Bioinformatics. 2003 May;Chapter 2:Unit 2.5.
Improvement of alignment accuracy utilizing sequentially conserved motifs.
Chakrabarti S, Bhardwaj N, Anand PA, Sowdhamini R.
BMC Bioinformatics. 2004 Oct 28;5:167.
PROMALS web server for accurate multiple protein sequence alignments.
Pei J, Kim BH, Tang M, Grishin NV.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W649-52. Epub 2007 Apr 22.
Multiple alignment of protein sequences with repeats and rearrangements.
Phuong TM, Do CB, Edgar RC, Batzoglou S.
Nucleic Acids Res. 2006;34(20):5932-42. Epub 2006 Oct 26.
ProDom: automated clustering of homologous domains.
Servant F, Bru C, Carrère S, Courcelle E, Gouzy J, Peyruc D, Kahn D.
Brief Bioinform. 2002 Sep;3(3):246-51.
CDD: a database of conserved domain alignments with links to domain three-dimensional structure.
Marchler-Bauer A, Panchenko AR, Shoemaker BA, Thiessen PA, Geer LY, Bryant SH.
Nucleic Acids Res. 2002 Jan 1;30(1):281-3.
SMART 4.0: towards genomic data integration.
Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D142-4.
AliWABA: alignment on the web through an A-Bruijn approach.
Jones NC, Zhi D, Raphael BJ.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W613-6.
MSAT: a multiple sequence alignment tool based on TOPS.
Ren T, Veeramalai M, Tan AC, Gilbert D.
Appl Bioinformatics. 2004;3(2-3):149-58.
Visualization of multiple genome annotations and alignments with the K-BROWSER.
Chakrabarti K, Pachter L.
Genome Res. 2004 Apr;14(4):716-20.
DOMAC: an accurate, hybrid protein domain prediction server.
Cheng J.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W354-6. Epub 2007 Jun 6.
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
Thompson JD, Koehl P, Ripp R, Poch O.
Proteins. 2005 Oct 1;61(1):127-36.
Recent improvements to the SMART domain-based sequence annotation resource.
Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P.
Nucleic Acids Res. 2002 Jan 1;30(1):242-4.
FFAS03: a server for profile--profile sequence alignments.
Jaroszewski L, Rychlewski L, Li Z, Li W, Godzik A.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W284-8.
ProbCons: Probabilistic consistency-based multiple sequence alignment.
Do CB, Mahabhashyam MS, Brudno M, Batzoglou S.
Genome Res. 2005 Feb;15(2):330-40.
DBAli tools: mining the protein structure space.
Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W393-7. Epub 2007 May 3.
A structure-based method for protein sequence alignment.
Kann MG, Thiessen PA, Panchenko AR, Schäffer AA, Altschul SF, Bryant SH.
Bioinformatics. 2005 Apr 15;21(8):1451-6. Epub 2004 Dec 21.
MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.
Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.
BMC Bioinformatics. 2006 Oct 17;7:459.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on