Warning: The NCBI web site requires JavaScript to function. more...
Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts.
Chiang DY, Moses AM, Kellis M, Lander ES, Eisen MB.
Genome Biol. 2003;4(7):R43. Epub 2003 Jun 26.
Related citations
Finding functional features in Saccharomyces genomes by phylogenetic footprinting.
Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, Waterston R, Cohen BA, Johnston M.
Science. 2003 Jul 4;301(5629):71-6. Epub 2003 May 29.
Integrating genomic data to predict transcription factor binding.
Holloway DT, Kon M, DeLisi C.
Genome Inform. 2005;16(1):83-94.
Position specific variation in the rate of evolution in transcription factor binding sites.
Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB.
BMC Evol Biol. 2003 Aug 28;3:19. Epub 2003 Aug 28.
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Siddharthan R, Siggia ED, van Nimwegen E.
PLoS Comput Biol. 2005 Dec;1(7):e67. Epub 2005 Dec 9.
Discovering regulatory binding-site modules using rule-based learning.
Hvidsten TR, Wilczyński B, Kryshtafovych A, Tiuryn J, Komorowski J, Fidelis K.
Genome Res. 2005 Jun;15(6):856-66.
Comparing expression profiles of genes with similar promoter regions.
Park PJ, Butte AJ, Kohane IS.
Bioinformatics. 2002 Dec;18(12):1576-84.
Context specific transcription factor prediction.
Yang E, Simcha D, Almon RR, Dubois DC, Jusko WJ, Androulakis IP.
Ann Biomed Eng. 2007 Jun;35(6):1053-67. Epub 2007 Mar 22.
Conservation and evolution of cis-regulatory systems in ascomycete fungi.
Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M, Eisen MB.
PLoS Biol. 2004 Dec;2(12):e398. Epub 2004 Nov 9.
Identification of regulatory regions which confer muscle-specific gene expression.
Wasserman WW, Fickett JW.
J Mol Biol. 1998 Apr 24;278(1):167-81.
Regulatory motif finding by logic regression.
Keles S, van der Laan MJ, Vulpe C.
Bioinformatics. 2004 Nov 1;20(16):2799-811. Epub 2004 May 27.
Sequencing and comparison of yeast species to identify genes and regulatory elements.
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES.
Nature. 2003 May 15;423(6937):241-54.
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
Pavesi G, Zambelli F, Pesole G.
BMC Bioinformatics. 2007 Feb 7;8:46.
A computational "genome walk" technique to identify regulatory interactions in gene networks.
Wagner A.
Pac Symp Biocomput. 1998:264-78.
Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system.
Tsai HK, Su CP, Lu MY, Shih CH, Wang D.
BMC Genomics. 2007 Oct 3;8:352.
Frequent gain and loss of functional transcription factor binding sites.
Doniger SW, Fay JC.
PLoS Comput Biol. 2007 May;3(5):e99. Epub 2007 Apr 19. Erratum in: PLoS Comput Biol. 2009 Feb;5(2). doi: 10.1371/annotation/363b6074-caec-4238-b88f-acbf45de498f.
Enrichment of regulatory signals in conserved non-coding genomic sequence.
Levy S, Hannenhalli S, Workman C.
Bioinformatics. 2001 Oct;17(10):871-7.
Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva.
Guo X, Silva JC.
BMC Genomics. 2008 Dec 3;9:582.
An improved map of conserved regulatory sites for Saccharomyces cerevisiae.
MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E.
BMC Bioinformatics. 2006 Mar 7;7:113.
Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.
Cliften PF, Hillier LW, Fulton L, Graves T, Miner T, Gish WR, Waterston RH, Johnston M.
Genome Res. 2001 Jul;11(7):1175-86.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on