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Metabolic networks of microbial systems.

Bhattacharya S, Chakrabarti S, Nayak A, Bhattacharya SK.

Microb Cell Fact. 2003 Apr 11;2(1):3.PMID: 12740044 [PubMed - as supplied by publisher]Free PMC ArticleFree textRelated citations

Metabolite coupling in genome-scale metabolic networks.

Becker SA, Price ND, Palsson BØ.

BMC Bioinformatics. 2006 Mar 6;7:111.PMID: 16519800 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Regulation of metabolic networks: understanding metabolic complexity in the systems biology era.

Sweetlove LJ, Fernie AR.

New Phytol. 2005 Oct;168(1):9-24. Review.PMID: 16159317 [PubMed - indexed for MEDLINE]Related citations

Metabolic networks: enzyme function and metabolite structure.

Hatzimanikatis V, Li C, Ionita JA, Broadbelt LJ.

Curr Opin Struct Biol. 2004 Jun;14(3):300-6. Review.PMID: 15193309 [PubMed - indexed for MEDLINE]Related citations

Predicting biological system objectives de novo from internal state measurements.

Gianchandani EP, Oberhardt MA, Burgard AP, Maranas CD, Papin JA.

BMC Bioinformatics. 2008 Jan 24;9:43.PMID: 18218092 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Biological Network Inference and analysis using SEBINI and CABIN.

Taylor R, Singhal M.

Methods Mol Biol. 2009;541:551-76. Review.PMID: 19381531 [PubMed - indexed for MEDLINE]Related citations

Analysis of metabolic network based on conservation of molecular structure.

Hogiri T, Furusawa C, Shinfuku Y, Ono N, Shimizu H.

Biosystems. 2009 Mar;95(3):175-8. Epub 2008 Sep 10.PMID: 18834921 [PubMed - indexed for MEDLINE]Related citations

Deducing topology of protein-protein interaction networks from experimentally measured sub-networks.

Yang L, Vondriska TM, Han Z, Maclellan WR, Weiss JN, Qu Z.

BMC Bioinformatics. 2008 Jul 3;9:301.PMID: 18598366 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles.

Durek P, Walther D.

BMC Syst Biol. 2008 Nov 25;2:100.PMID: 19032748 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Using chemistry and microfluidics to understand the spatial dynamics of complex biological networks.

Kastrup CJ, Runyon MK, Lucchetta EM, Price JM, Ismagilov RF.

Acc Chem Res. 2008 Apr;41(4):549-58. Epub 2008 Jan 25.PMID: 18217723 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

From proteomics toward systems biology: integration of different types of proteomics data into network models.

Rho S, You S, Kim Y, Hwang D.

BMB Rep. 2008 Mar 31;41(3):184-93. Review.PMID: 18377721 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Mining bridge and brick motifs from complex biological networks for functionally and statistically significant discovery.

Cheng CY, Huang CY, Sun CT.

IEEE Trans Syst Man Cybern B Cybern. 2008 Feb;38(1):17-24.PMID: 18270079 [PubMed - indexed for MEDLINE]Related citations

Coordinations between gene modules control the operation of plant amino acid metabolic networks.

Less H, Galili G.

BMC Syst Biol. 2009 Jan 26;3:14.PMID: 19171064 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Influence of metabolic network structure and function on enzyme evolution.

Vitkup D, Kharchenko P, Wagner A.

Genome Biol. 2006;7(5):R39. Epub 2006 May 9.PMID: 16684370 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Integrative microRNA and proteomic approaches identify novel osteoarthritis genes and their collaborative metabolic and inflammatory networks.

Iliopoulos D, Malizos KN, Oikonomou P, Tsezou A.

PLoS One. 2008;3(11):e3740. Epub 2008 Nov 17.PMID: 19011694 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Creative elements: network-based predictions of active centres in proteins and cellular and social networks.

Csermely P.

Trends Biochem Sci. 2008 Dec;33(12):569-76. Epub 2008 Oct 20.PMID: 18945619 [PubMed - indexed for MEDLINE]Related citations

Clustering algorithms for detecting functional modules in protein interaction networks.

Gao L, Sun PG, Song J.

J Bioinform Comput Biol. 2009 Feb;7(1):217-42.PMID: 19226668 [PubMed - indexed for MEDLINE]Related citations

A structural approach for finding functional modules from large biological networks.

Mete M, Tang F, Xu X, Yuruk N.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S19.PMID: 18793464 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Network visualization and network analysis.

Nikiforova VJ, Willmitzer L.

EXS. 2007;97:245-75. Review.PMID: 17432271 [PubMed - indexed for MEDLINE]Related citations

Efficient, sparse biological network determination.

August E, Papachristodoulou A.

BMC Syst Biol. 2009 Feb 23;3:25.PMID: 19236711 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations