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    Results: 1 to 20 of 93

    1.

    Beyond 100 genomes.

    Janssen P, Audit B, Cases I, Darzentas N, Goldovsky L, Kunin V, Lopez-Bigas N, Peregrin-Alvarez JM, Pereira-Leal JB, Tsoka S, Ouzounis CA.

    Genome Biol. 2003;4(5):402. Epub 2003 Apr 28.

    PMID:
    12734008
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Recent developments and future directions in computational genomics.

    Tsoka S, Ouzounis CA.

    FEBS Lett. 2000 Aug 25;480(1):42-8. Review.

    PMID:
    10967327
    [PubMed - indexed for MEDLINE]
    3.

    Evolutionary sequence analysis of complete eukaryote genomes.

    Blair JE, Shah P, Hedges SB.

    BMC Bioinformatics. 2005 Mar 11;6:53.

    PMID:
    15762985
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.

    Auch AF, Henz SR, Holland BR, Göker M.

    BMC Bioinformatics. 2006 Jul 19;7:350.

    PMID:
    16854218
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Beyond annotation transfer by homology: novel protein-function prediction methods to assist drug discovery.

    Ofran Y, Punta M, Schneider R, Rost B.

    Drug Discov Today. 2005 Nov 1;10(21):1475-82. Review.

    PMID:
    16243268
    [PubMed - indexed for MEDLINE]
    6.

    GANESH: software for customized annotation of genome regions.

    Huntley D, Hummerich H, Smedley D, Kittivoravitkul S, McCarthy M, Little P, Sergot M.

    Genome Res. 2003 Sep;13(9):2195-202.

    PMID:
    12952886
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Ancestral animal genomes reconstruction.

    Rascol VL, Pontarotti P, Levasseur A.

    Curr Opin Immunol. 2007 Oct;19(5):542-6. Epub 2007 Aug 15. Review.

    PMID:
    17702562
    [PubMed - indexed for MEDLINE]
    8.

    The RAST Server: rapid annotations using subsystems technology.

    Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O.

    BMC Genomics. 2008 Feb 8;9:75.

    PMID:
    18261238
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Computational tools for the analysis of rearrangements in mammalian genomes.

    Bourque G, Tesler G.

    Methods Mol Biol. 2008;452:431-55. Review.

    PMID:
    18566776
    [PubMed - indexed for MEDLINE]
    10.

    Bioinformatics in the post-genome era.

    Yu U, Lee SH, Kim YJ, Kim S.

    J Biochem Mol Biol. 2004 Jan 31;37(1):75-82. Review.

    PMID:
    14761305
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    In silico characterization of proteins: UniProt, InterPro and Integr8.

    Mulder NJ, Kersey P, Pruess M, Apweiler R.

    Mol Biotechnol. 2008 Feb;38(2):165-77. Epub 2007 Oct 4. Review.

    PMID:
    18219596
    [PubMed - indexed for MEDLINE]
    12.

    Methods for obtaining and analyzing whole chloroplast genome sequences.

    Jansen RK, Raubeson LA, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, Fourcade HM, Kuehl JV, McNeal JR, Leebens-Mack J, Cui L.

    Methods Enzymol. 2005;395:348-84.

    PMID:
    15865976
    [PubMed - indexed for MEDLINE]
    13.

    Alignments of mitochondrial genome arrangements: applications to metazoan phylogeny.

    Fritzsch G, Schlegel M, Stadler PF.

    J Theor Biol. 2006 Jun 21;240(4):511-20. Epub 2005 Dec 1.

    PMID:
    16325206
    [PubMed - indexed for MEDLINE]
    14.

    ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets.

    Lin GN, Cai Z, Lin G, Chakraborty S, Xu D.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S5.

    PMID:
    19208152
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    What lies beyond bioinformatics?

    Palsson BO.

    Nat Biotechnol. 1997 Jan;15(1):3-4. No abstract available.

    PMID:
    9035092
    [PubMed - indexed for MEDLINE]
    16.

    A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

    Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

    Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

    PMID:
    14759257
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Computing protein function.

    Teichmann SA, Mitchison G.

    Nat Biotechnol. 2000 Jan;18(1):27. No abstract available.

    PMID:
    10625385
    [PubMed - indexed for MEDLINE]
    18.

    Genome phylogenetic analysis based on extended gene contents.

    Gu X, Zhang H.

    Mol Biol Evol. 2004 Jul;21(7):1401-8. Epub 2004 Apr 14.

    PMID:
    15084675
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    Recent developments in computational approaches for uncovering genomic homology.

    Simillion C, Vandepoele K, Van de Peer Y.

    Bioessays. 2004 Nov;26(11):1225-35. Review.

    PMID:
    15499578
    [PubMed - indexed for MEDLINE]
    20.

    The bovine lactation genome: insights into the evolution of mammalian milk.

    Lemay DG, Lynn DJ, Martin WF, Neville MC, Casey TM, Rincon G, Kriventseva EV, Barris WC, Hinrichs AS, Molenaar AJ, Pollard KS, Maqbool NJ, Singh K, Murney R, Zdobnov EM, Tellam RL, Medrano JF, German JB, Rijnkels M.

    Genome Biol. 2009;10(4):R43. Epub 2009 Apr 24.

    PMID:
    19393040
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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