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    Results: 1 to 20 of 130

    1.

    GoMiner: a resource for biological interpretation of genomic and proteomic data.

    Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, Narasimhan S, Kane DW, Reinhold WC, Lababidi S, Bussey KJ, Riss J, Barrett JC, Weinstein JN.

    Genome Biol. 2003;4(4):R28. Epub 2003 Mar 25.

    PMID:
    12702209
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Development of gene ontology tool for biological interpretation of genomic and proteomic data.

    Feng W, Wang G, Zeeberg BR, Guo K, Fojo AT, Kane DW, Reinhold WC, Lababidi S, Weinstein JN, Wang MD.

    AMIA Annu Symp Proc. 2003:839.

    PMID:
    14728344
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).

    Zeeberg BR, Qin H, Narasimhan S, Sunshine M, Cao H, Kane DW, Reimers M, Stephens RM, Bryant D, Burt SK, Elnekave E, Hari DM, Wynn TA, Cunningham-Rundles C, Stewart DM, Nelson D, Weinstein JN.

    BMC Bioinformatics. 2005 Jul 5;6:168.

    PMID:
    15998470
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies.

    Zhang B, Schmoyer D, Kirov S, Snoddy J.

    BMC Bioinformatics. 2004 Feb 18;5:16.

    PMID:
    14975175
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    MILANO--custom annotation of microarray results using automatic literature searches.

    Rubinstein R, Simon I.

    BMC Bioinformatics. 2005 Jan 20;6:12.

    PMID:
    15661078
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

    Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

    PMID:
    17576678
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

    Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

    BMC Bioinformatics. 2005 Apr 12;6:95.

    PMID:
    15826305
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

    Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

    BMC Bioinformatics. 2005 Apr 6;6:86.

    PMID:
    15813968
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Identifying biological themes within lists of genes with EASE.

    Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA.

    Genome Biol. 2003;4(10):R70. Epub 2003 Sep 11.

    PMID:
    14519205
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    EGOMiner: a comprehensive genomics and proteomics data analysis and biological function interpretation system.

    Feng W, Henning P, Wang MD.

    Conf Proc IEEE Eng Med Biol Soc. 2004;4:2809-12.

    PMID:
    17270861
    [PubMed]
    11.

    PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.

    Pan D, Sun N, Cheung KH, Guan Z, Ma L, Holford M, Deng X, Zhao H.

    BMC Bioinformatics. 2003 Nov 7;4:56.

    PMID:
    14604444
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    ProGenExpress: visualization of quantitative data on prokaryotic genomes.

    Watson M.

    BMC Bioinformatics. 2005 Apr 13;6:98.

    PMID:
    15829007
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    PubMatrix: a tool for multiplex literature mining.

    Becker KG, Hosack DA, Dennis G Jr, Lempicki RA, Bright TJ, Cheadle C, Engel J.

    BMC Bioinformatics. 2003 Dec 10;4:61.

    PMID:
    14667255
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.
    16.

    GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.

    Martínez-Cruz LA, Rubio A, Martínez-Chantar ML, Labarga A, Barrio I, Podhorski A, Segura V, Sevilla Campo JL, Avila MA, Mato JM.

    Bioinformatics. 2003 Nov 1;19(16):2158-60.

    PMID:
    14594726
    [PubMed - indexed for MEDLINE]
    Free Article
    17.

    WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data.

    Yi M, Horton JD, Cohen JC, Hobbs HH, Stephens RM.

    BMC Bioinformatics. 2006 Jan 19;7:30.

    PMID:
    16423281
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Visualization methods for statistical analysis of microarray clusters.

    Hibbs MA, Dirksen NC, Li K, Troyanskaya OG.

    BMC Bioinformatics. 2005 May 12;6:115.

    PMID:
    15890080
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis.

    Cheng J, Sun S, Tracy A, Hubbell E, Morris J, Valmeekam V, Kimbrough A, Cline MS, Liu G, Shigeta R, Kulp D, Siani-Rose MA.

    Bioinformatics. 2004 Jun 12;20(9):1462-3. Epub 2004 Feb 12.

    PMID:
    14962933
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics.

    Chung HJ, Park CH, Han MR, Lee S, Ohn JH, Kim J, Kim J, Kim JH.

    Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W621-6.

    PMID:
    15980549
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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