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    Results: 1 to 20 of 180

    1.

    Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes.

    Anantharaman V, Aravind L.

    Genome Biol. 2003;4(2):R11. Epub 2003 Feb 3.

    PMID:
    12620121
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Structural analysis of papain-like NlpC/P60 superfamily enzymes with a circularly permuted topology reveals potential lipid binding sites.

    Xu Q, Rawlings ND, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.

    PLoS One. 2011;6(7):e22013. Epub 2011 Jul 22.

    PMID:
    21799766
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Characterization of proteins belonging to the CHAP-related superfamily within the Firmicutes.

    Layec S, Decaris B, Leblond-Bourget N.

    J Mol Microbiol Biotechnol. 2008;14(1-3):31-40.

    PMID:
    17957108
    [PubMed - indexed for MEDLINE]
    4.

    Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases.

    Rigden DJ, Jedrzejas MJ, Galperin MY.

    Trends Biochem Sci. 2003 May;28(5):230-4. Review.

    PMID:
    12765833
    [PubMed - indexed for MEDLINE]
    5.

    Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes.

    Burroughs AM, Allen KN, Dunaway-Mariano D, Aravind L.

    J Mol Biol. 2006 Sep 1;361(5):1003-34. Epub 2006 Jul 7.

    PMID:
    16889794
    [PubMed - indexed for MEDLINE]
    6.

    Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.

    Xu Q, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Yeh A, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA.

    Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1354-64. Epub 2010 Jul 27.

    PMID:
    20944232
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily.

    Mazumder R, Iyer LM, Vasudevan S, Aravind L.

    Nucleic Acids Res. 2002 Dec 1;30(23):5229-43.

    PMID:
    12466548
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Solution structure of the N-terminal catalytic domain of human H-REV107--a novel circular permutated NlpC/P60 domain.

    Ren X, Lin J, Jin C, Xia B.

    FEBS Lett. 2010 Oct 8;584(19):4222-6. Epub 2010 Sep 17.

    PMID:
    20837014
    [PubMed - indexed for MEDLINE]
    9.

    Novel predicted peptidases with a potential role in the ubiquitin signaling pathway.

    Iyer LM, Koonin EV, Aravind L.

    Cell Cycle. 2004 Nov;3(11):1440-50. Epub 2004 Nov 6.

    PMID:
    15483401
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability.

    Anantharaman V, Aravind L.

    BMC Genomics. 2004 Jul 16;5(1):45.

    PMID:
    15257761
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    The emergence of catalytic and structural diversity within the beta-clip fold.

    Iyer LM, Aravind L.

    Proteins. 2004 Jun 1;55(4):977-91.

    PMID:
    15146494
    [PubMed - indexed for MEDLINE]
    12.

    A conserved poxvirus NlpC/P60 superfamily protein contributes to vaccinia virus virulence in mice but not to replication in cell culture.

    Senkevich TG, Wyatt LS, Weisberg AS, Koonin EV, Moss B.

    Virology. 2008 May 10;374(2):506-14. Epub 2008 Feb 20.

    PMID:
    18281072
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Structural basis of murein peptide specificity of a gamma-D-glutamyl-l-diamino acid endopeptidase.

    Xu Q, Sudek S, McMullan D, Miller MD, Geierstanger B, Jones DH, Krishna SS, Spraggon G, Bursalay B, Abdubek P, Acosta C, Ambing E, Astakhova T, Axelrod HL, Carlton D, Caruthers J, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Trout CV, van den Bedem H, Weekes D, White A, Wolf G, Zubieta C, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA.

    Structure. 2009 Feb 13;17(2):303-13.

    PMID:
    19217401
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging.

    Iyer LM, Makarova KS, Koonin EV, Aravind L.

    Nucleic Acids Res. 2004 Oct 5;32(17):5260-79. Print 2004.

    PMID:
    15466593
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad.

    Aramini JM, Rossi P, Huang YJ, Zhao L, Jiang M, Maglaqui M, Xiao R, Locke J, Nair R, Rost B, Acton TB, Inouye M, Montelione GT.

    Biochemistry. 2008 Sep 16;47(37):9715-7. Epub 2008 Aug 21.

    PMID:
    18715016
    [PubMed - indexed for MEDLINE]
    16.
    18.

    A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain.

    Aravind L, Iyer LM, Leipe DD, Koonin EV.

    Genome Biol. 2004;5(5):R30. Epub 2004 Apr 16.

    PMID:
    15128444
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Divergent evolution of the thiolase superfamily and chalcone synthase family.

    Jiang C, Kim SY, Suh DY.

    Mol Phylogenet Evol. 2008 Dec;49(3):691-701. Epub 2008 Sep 12.

    PMID:
    18824113
    [PubMed - indexed for MEDLINE]

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