PubMed

Myriads of protein families, and still counting.

Kunin V, Cases I, Enright AJ, de Lorenzo V, Ouzounis CA.

Genome Biol. 2003;4(2):401. Epub 2003 Jan 28.PMID: 12620116 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein families and TRIBES in genome sequence space.

Enright AJ, Kunin V, Ouzounis CA.

Nucleic Acids Res. 2003 Aug 1;31(15):4632-8.PMID: 12888524 [PubMed - indexed for MEDLINE]Related articlesFree article

Whole-genome sequencing and variant discovery in C. elegans.

Hillier LW, Marth GT, Quinlan AR, Dooling D, Fewell G, Barnett D, Fox P, Glasscock JI, Hickenbotham M, Huang W, Magrini VJ, Richt RJ, Sander SN, Stewart DA, Stromberg M, Tsung EF, Wylie T, Schedl T, Wilson RK, Mardis ER.

Nat Methods. 2008 Feb;5(2):183-8. Epub 2008 Jan 20.PMID: 18204455 [PubMed - indexed for MEDLINE]Related articles

Space-conserving optimal DNA-protein alignment.

Ko P, Narayanan M, Kalyanaraman A, Aluru S.

Proc IEEE Comput Syst Bioinform Conf. 2004:80-8.PMID: 16448002 [PubMed - indexed for MEDLINE]Related articles

Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis-a case of "Tandem duplication-random loss" for genome rearrangement in Crassostrea?

Yu Z, Wei Z, Kong X, Shi W.

BMC Genomics. 2008 Oct 11;9:477.PMID: 18847502 [PubMed - indexed for MEDLINE]Related articlesFree article

A computer simulation analysis of the accuracy of partial genome sequencing and restriction fragment analysis in estimating genetic relationships: an application to papillomavirus DNA sequences.

Qiao B, Weigel RM.

BMC Bioinformatics. 2004 Jul 27;5:102.PMID: 15279682 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering and detecting transposable elements in genome sequences.

Bergman CM, Quesneville H.

Brief Bioinform. 2007 Nov;8(6):382-92. Epub 2007 Oct 10. Review.PMID: 17932080 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs.

Oduru S, Campbell JL, Karri S, Hendry WJ, Khan SA, Williams SC.

BMC Genomics. 2003 Jun 3;4(1):22.PMID: 12783626 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequencing and analysis of Neanderthal genomic DNA.

Noonan JP, Coop G, Kudaravalli S, Smith D, Krause J, Alessi J, Chen F, Platt D, Pääbo S, Pritchard JK, Rubin EM.

Science. 2006 Nov 17;314(5802):1113-8.PMID: 17110569 [PubMed - indexed for MEDLINE]Related articlesFree article

Finding the fifth base: genome-wide sequencing of cytosine methylation.

Lister R, Ecker JR.

Genome Res. 2009 Jun;19(6):959-66. Epub 2009 Mar 9. Review.PMID: 19273618 [PubMed - indexed for MEDLINE]Related articlesFree article

SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily.

DeMarco R, Venancio TM, Verjovski-Almeida S.

BMC Evol Biol. 2006 Nov 7;6:89.PMID: 17090310 [PubMed - indexed for MEDLINE]Related articlesFree article

[Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]

Zhang DL, Ji L, Li YD.

Yi Chuan Xue Bao. 2004 May;31(5):431-43. Chinese. PMID: 15478601 [PubMed - indexed for MEDLINE]Related articles

Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.

Keller O, Odronitz F, Stanke M, Kollmar M, Waack S.

BMC Bioinformatics. 2008 Jun 13;9:278.PMID: 18554390 [PubMed - indexed for MEDLINE]Related articlesFree article

Improved strategies for sequence-independent amplification and sequencing of viral double-stranded RNA genomes.

Potgieter AC, Page NA, Liebenberg J, Wright IM, Landt O, van Dijk AA.

J Gen Virol. 2009 Jun;90(Pt 6):1423-32. Epub 2009 Mar 4.PMID: 19264638 [PubMed - indexed for MEDLINE]Related articles

Emerging DNA sequencing technologies for human genomic medicine.

Strausberg RL, Levy S, Rogers YH.

Drug Discov Today. 2008 Jul;13(13-14):569-77. Epub 2008 May 22. Review.PMID: 18598911 [PubMed - indexed for MEDLINE]Related articles

Identification and distribution of protein families in 120 completed genomes using Gene3D.

Lee D, Grant A, Marsden RL, Orengo C.

Proteins. 2005 May 15;59(3):603-15.PMID: 15768405 [PubMed - indexed for MEDLINE]Related articles

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome.

Amaral AJ, Megens HJ, Kerstens HH, Heuven HC, Dibbits B, Crooijmans RP, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Aug 12;10:374.PMID: 19674453 [PubMed - indexed for MEDLINE]Related articlesFree article

Dog Y chromosomal DNA sequence: identification, sequencing and SNP discovery.

Natanaelsson C, Oskarsson MC, Angleby H, Lundeberg J, Kirkness E, Savolainen P.

BMC Genet. 2006 Oct 6;7:45.PMID: 17026745 [PubMed - indexed for MEDLINE]Related articlesFree article

The complete genome of an individual by massively parallel DNA sequencing.

Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

Nature. 2008 Apr 17;452(7189):872-6.PMID: 18421352 [PubMed - indexed for MEDLINE]Related articles

EagleView: a genome assembly viewer for next-generation sequencing technologies.

Huang W, Marth G.

Genome Res. 2008 Sep;18(9):1538-43. Epub 2008 Jun 11.PMID: 18550804 [PubMed - indexed for MEDLINE]Related articlesFree article