PubMed

Compensatory mutations cause excess of antagonistic epistasis in RNA secondary structure folding.

Wilke CO, Lenski RE, Adami C.

BMC Evol Biol. 2003 Feb 5;3(1):3.PMID: 12590655 [PubMed - indexed for MEDLINE]Related articlesFree article

Interaction between directional epistasis and average mutational effects.

Wilke CO, Adami C.

Proc Biol Sci. 2001 Jul 22;268(1475):1469-74.PMID: 11454290 [PubMed - indexed for MEDLINE]Related articlesFree article

Phenotypic error threshold; additivity and epistasis in RNA evolution.

Takeuchi N, Poorthuis PH, Hogeweg P.

BMC Evol Biol. 2005 Feb 3;5(1):9.PMID: 15691379 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution can favor antagonistic epistasis.

Desai MM, Weissman D, Feldman MW.

Genetics. 2007 Oct;177(2):1001-10. Epub 2007 Aug 24.PMID: 17720923 [PubMed - indexed for MEDLINE]Related articlesFree article

In silico predicted robustness of viroid RNA secondary structures. II. Interaction between mutation pairs.

Sanjuán R, Forment J, Elena SF.

Mol Biol Evol. 2006 Nov;23(11):2123-30. Epub 2006 Aug 10.PMID: 16901984 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of epistatic interactions and fitness landscapes using a new geometric approach.

Beerenwinkel N, Pachter L, Sturmfels B, Elena SF, Lenski RE.

BMC Evol Biol. 2007 Apr 13;7:60.PMID: 17433106 [PubMed - indexed for MEDLINE]Related articlesFree article

Perspective: Sign epistasis and genetic constraint on evolutionary trajectories.

Weinreich DM, Watson RA, Chao L.

Evolution. 2005 Jun;59(6):1165-74. Review.PMID: 16050094 [PubMed - indexed for MEDLINE]Related articles

The ascent of the abundant: how mutational networks constrain evolution.

Cowperthwaite MC, Economo EP, Harcombe WR, Miller EL, Meyers LA.

PLoS Comput Biol. 2008 Jul 18;4(7):e1000110.PMID: 18636097 [PubMed - indexed for MEDLINE]Related articlesFree article

Pattern generation in molecular evolution: exploitation of the variation in RNA landscapes.

Huynen MA, Hogeweg P.

J Mol Evol. 1994 Jul;39(1):71-9.PMID: 7520506 [PubMed - indexed for MEDLINE]Related articles

Quantifying antagonistic epistasis in a multifunctional RNA secondary structure of the Rous sarcoma virus.

Sanjuán R.

J Gen Virol. 2006 Jun;87(Pt 6):1595-602.PMID: 16690924 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomic buffering mitigates the effects of deleterious mutations in bacteria.

Maisnier-Patin S, Roth JR, Fredriksson A, Nyström T, Berg OG, Andersson DI.

Nat Genet. 2005 Dec;37(12):1376-9. Epub 2005 Nov 6.PMID: 16273106 [PubMed - indexed for MEDLINE]Related articles

The contribution of epistasis to the architecture of fitness in an RNA virus.

Sanjuán R, Moya A, Elena SF.

Proc Natl Acad Sci U S A. 2004 Oct 26;101(43):15376-9. Epub 2004 Oct 18.PMID: 15492220 [PubMed - indexed for MEDLINE]Related articlesFree article

Epistasis between new mutations and genetic background and a test of genetic canalization.

Elena SF, Lenski RE.

Evolution. 2001 Sep;55(9):1746-52.PMID: 11681730 [PubMed - indexed for MEDLINE]Related articles

Rapid evolutionary escape by large populations from local fitness peaks is likely in nature.

Weinreich DM, Chao L.

Evolution. 2005 Jun;59(6):1175-82.PMID: 16050095 [PubMed - indexed for MEDLINE]Related articles

Landscapes: complex optimization problems and biopolymer structures.

Schuster P, Stadler PF.

Comput Chem. 1994 Sep;18(3):295-324.PMID: 7524995 [PubMed - indexed for MEDLINE]Related articles

Long-term adaptation of epistatic genetic networks.

Yukilevich R, Lachance J, Aoki F, True JR.

Evolution. 2008 Sep;62(9):2215-35. Epub 2008 Jun 28. Erratum in: Evolution. 2008 Nov;62(11):2951. PMID: 18564374 [PubMed - indexed for MEDLINE]Related articles

Dependence of epistasis on environment and mutation severity as revealed by in silico mutagenesis of phage t7.

You L, Yin J.

Genetics. 2002 Apr;160(4):1273-81.PMID: 11973286 [PubMed - indexed for MEDLINE]Related articlesFree article

Rational evolutionary design: the theory of in vitro protein evolution.

Voigt CA, Kauffman S, Wang ZG.

Adv Protein Chem. 2000;55:79-160. Review.PMID: 11050933 [PubMed - indexed for MEDLINE]Related articles

Epistasis and the adaptability of an RNA virus.

Sanjuán R, Cuevas JM, Moya A, Elena SF.

Genetics. 2005 Jul;170(3):1001-8. Epub 2005 May 6.PMID: 15879507 [PubMed - indexed for MEDLINE]Related articlesFree article

Selection intensity against deleterious mutations in RNA secondary structures and rate of compensatory nucleotide substitutions.

Innan H, Stephan W.

Genetics. 2001 Sep;159(1):389-99.PMID: 11560913 [PubMed - indexed for MEDLINE]Related articlesFree article