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    Results: 1 to 20 of 176

    1.

    Computational analysis of core promoters in the Drosophila genome.

    Ohler U, Liao GC, Niemann H, Rubin GM.

    Genome Biol. 2002;3(12):RESEARCH0087. Epub 2002 Dec 20.

    PMID:
    12537576
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.

    Ohler U.

    Nucleic Acids Res. 2006;34(20):5943-50. Epub 2006 Oct 26.

    PMID:
    17068082
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.

    Rach EA, Yuan HY, Majoros WH, Tomancak P, Ohler U.

    Genome Biol. 2009;10(7):R73. Epub 2009 Jul 9.

    PMID:
    19589141
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Characterization of transcription from TATA-less promoters: identification of a new core promoter element XCPE2 and analysis of factor requirements.

    Anish R, Hossain MB, Jacobson RH, Takada S.

    PLoS One. 2009;4(4):e5103. Epub 2009 Apr 1.

    PMID:
    19337366
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters.

    Kutach AK, Kadonaga JT.

    Mol Cell Biol. 2000 Jul;20(13):4754-64.

    PMID:
    10848601
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Genome-wide analysis of promoter architecture in Drosophila melanogaster.

    Hoskins RA, Landolin JM, Brown JB, Sandler JE, Takahashi H, Lassmann T, Yu C, Booth BW, Zhang D, Wan KH, Yang L, Boley N, Andrews J, Kaufman TC, Graveley BR, Bickel PJ, Carninci P, Carlson JW, Celniker SE.

    Genome Res. 2011 Feb;21(2):182-92. Epub 2010 Dec 22.

    PMID:
    21177961
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters.

    Ponjavic J, Lenhard B, Kai C, Kawai J, Carninci P, Hayashizaki Y, Sandelin A.

    Genome Biol. 2006;7(8):R78. Epub 2006 Aug 17.

    PMID:
    16916456
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters.

    Yang C, Bolotin E, Jiang T, Sladek FM, Martinez E.

    Gene. 2007 Mar 1;389(1):52-65. Epub 2006 Oct 10.

    PMID:
    17123746
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    The features of Drosophila core promoters revealed by statistical analysis.

    Gershenzon NI, Trifonov EN, Ioshikhes IP.

    BMC Genomics. 2006 Jun 21;7:161.

    PMID:
    16790048
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila.

    Burke TW, Kadonaga JT.

    Genes Dev. 1997 Nov 15;11(22):3020-31.

    PMID:
    9367984
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Genome annotation assessment in Drosophila melanogaster.

    Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, Lewis SE.

    Genome Res. 2000 Apr;10(4):483-501.

    PMID:
    10779488
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Computational detection of prokaryotic core promoters in genomic sequences.

    Kim KB, Sim JS.

    J Microbiol. 2005 Oct;43(5):411-6.

    PMID:
    16273032
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

    Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE.

    Genome Biol. 2004;5(9):R61. Epub 2004 Aug 20.

    PMID:
    15345045
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Clustering of DNA sequences in human promoters.

    FitzGerald PC, Shlyakhtenko A, Mir AA, Vinson C.

    Genome Res. 2004 Aug;14(8):1562-74. Epub 2004 Jul 15.

    PMID:
    15256515
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs.

    Jin VX, Singer GA, Agosto-Pérez FJ, Liyanarachchi S, Davuluri RV.

    BMC Bioinformatics. 2006 Mar 7;7:114.

    PMID:
    16522199
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Comparative genomics of Drosophila and human core promoters.

    FitzGerald PC, Sturgill D, Shyakhtenko A, Oliver B, Vinson C.

    Genome Biol. 2006;7(7):R53.

    PMID:
    16827941
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Genome wide analysis of Arabidopsis core promoters.

    Molina C, Grotewold E.

    BMC Genomics. 2005 Feb 25;6:25.

    PMID:
    15733318
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Large-scale discovery of promoter motifs in Drosophila melanogaster.

    Down TA, Bergman CM, Su J, Hubbard TJ.

    PLoS Comput Biol. 2007 Jan 19;3(1):e7. Epub 2006 Dec 5.

    PMID:
    17238282
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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