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    Results: 1 to 20 of 110

    1.

    Apollo: a sequence annotation editor.

    Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglir L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smithy CD, Tupy JL, Rubin GM, Misra S, Mungall CJ, Clamp ME.

    Genome Biol. 2002;3(12):RESEARCH0082. Epub 2002 Dec 23. Review.

    PMID:
    12537571
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Using Apollo to browse and edit genome annotations.

    Misra S, Harris N.

    Curr Protoc Bioinformatics. 2006 Jan;Chapter 9:Unit 9.5.

    PMID:
    18428771
    [PubMed - indexed for MEDLINE]
    3.

    Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation.

    Klee K, Ernst R, Spannagl M, Mayer KF.

    BMC Bioinformatics. 2007 Aug 30;8:320.

    PMID:
    17760972
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Apollo: a community resource for genome annotation editing.

    Ed L, Nomi H, Mark G, Raymond C, Suzanna L.

    Bioinformatics. 2009 Jul 15;25(14):1836-7. Epub 2009 May 13.

    PMID:
    19439563
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.

    Teber ET, Crawford E, Bolton KB, Van Dyk D, Schofield PR, Kapoor V, Church WB.

    BMC Bioinformatics. 2006 Jan 23;7:33.

    PMID:
    16426464
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Semia: semi-automatic interactive graphic editing tool to annotate ambulatory ECG records.

    Dorn R, Jager F.

    Comput Methods Programs Biomed. 2004 Sep;75(3):235-49.

    PMID:
    15265622
    [PubMed - indexed for MEDLINE]
    7.

    CAAT-Box, Contigs-Assembly and Annotation Tool-Box for genome sequencing projects.

    Frangeul L, Glaser P, Rusniok C, Buchrieser C, Duchaud E, Dehoux P, Kunst F.

    Bioinformatics. 2004 Mar 22;20(5):790-7. Epub 2004 Jan 29.

    PMID:
    14752000
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.

    Carver T, Berriman M, Tivey A, Patel C, Böhme U, Barrell BG, Parkhill J, Rajandream MA.

    Bioinformatics. 2008 Dec 1;24(23):2672-6. Epub 2008 Oct 9.

    PMID:
    18845581
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    G-InforBIO: integrated system for microbial genomics.

    Tanaka N, Abe T, Miyazaki S, Sugawara H.

    BMC Bioinformatics. 2006 Aug 4;7:368.

    PMID:
    16887044
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.

    Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M.

    Genome Res. 2008 Jan;18(1):188-96. Epub 2007 Nov 19.

    PMID:
    18025269
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    GeneNotes--a novel information management software for biologists.

    Hong P, Wong WH.

    BMC Bioinformatics. 2005 Feb 1;6:20.

    PMID:
    15686593
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

    Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

    Bioinformatics. 2005 Sep 15;21(18):3669-71. Epub 2005 Aug 2.

    PMID:
    16076887
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    An integrated computational pipeline and database to support whole-genome sequence annotation.

    Mungall CJ, Misra S, Berman BP, Carlson J, Frise E, Harris N, Marshall B, Shu S, Kaminker JS, Prochnik SE, Smith CD, Smith E, Tupy JL, Wiel C, Rubin GM, Lewis SE.

    Genome Biol. 2002;3(12):RESEARCH0081. Epub 2002 Dec 23. Review.

    PMID:
    12537570
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

    Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

    BMC Bioinformatics. 2005 Apr 12;6:95.

    PMID:
    15826305
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    The otter annotation system.

    Searle SM, Gilbert J, Iyer V, Clamp M.

    Genome Res. 2004 May;14(5):963-70.

    PMID:
    15123593
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    GeneTools--application for functional annotation and statistical hypothesis testing.

    Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

    BMC Bioinformatics. 2006 Oct 24;7:470.

    PMID:
    17062145
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts.

    Choi K, Kim S.

    BMC Bioinformatics. 2008 Mar 6;9:145.

    PMID:
    18325116
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Processing sequence annotation data using the Lua programming language.

    Ueno Y, Arita M, Kumagai T, Asai K.

    Genome Inform. 2003;14:154-63.

    PMID:
    15706530
    [PubMed - indexed for MEDLINE]
    19.

    JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

    Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

    BMC Bioinformatics. 2006 Nov 23;7:513.

    PMID:
    17123449
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Automatic annotation of organellar genomes with DOGMA.

    Wyman SK, Jansen RK, Boore JL.

    Bioinformatics. 2004 Nov 22;20(17):3252-5. Epub 2004 Jun 4.

    PMID:
    15180927
    [PubMed - indexed for MEDLINE]
    Free Article

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