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    Results: 1 to 20 of 156

    1.

    An integrated computational pipeline and database to support whole-genome sequence annotation.

    Mungall CJ, Misra S, Berman BP, Carlson J, Frise E, Harris N, Marshall B, Shu S, Kaminker JS, Prochnik SE, Smith CD, Smith E, Tupy JL, Wiel C, Rubin GM, Lewis SE.

    Genome Biol. 2002;3(12):RESEARCH0081. Epub 2002 Dec 23. Review.

    PMID:
    12537570
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The Ensembl analysis pipeline.

    Potter SC, Clarke L, Curwen V, Keenan S, Mongin E, Searle SM, Stabenau A, Storey R, Clamp M.

    Genome Res. 2004 May;14(5):934-41.

    PMID:
    15123589
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    GenDB--an open source genome annotation system for prokaryote genomes.

    Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A.

    Nucleic Acids Res. 2003 Apr 15;31(8):2187-95.

    PMID:
    12682369
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    JBrowse: a next-generation genome browser.

    Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH.

    Genome Res. 2009 Sep;19(9):1630-8. Epub 2009 Jul 1.

    PMID:
    19570905
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    The discovery net system for high throughput bioinformatics.

    Rowe A, Kalaitzopoulos D, Osmond M, Ghanem M, Guo Y.

    Bioinformatics. 2003;19 Suppl 1:i225-31.

    PMID:
    12855463
    [PubMed - indexed for MEDLINE]
    Free Article
    6.

    Ensembl 2004.

    Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D468-70.

    PMID:
    14681459
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

    Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

    BMC Bioinformatics. 2005 Apr 12;6:95.

    PMID:
    15826305
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    A Chado case study: an ontology-based modular schema for representing genome-associated biological information.

    Mungall CJ, Emmert DB; FlyBase Consortium.

    Bioinformatics. 2007 Jul 1;23(13):i337-46.

    PMID:
    17646315
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    The otter annotation system.

    Searle SM, Gilbert J, Iyer V, Clamp M.

    Genome Res. 2004 May;14(5):963-70.

    PMID:
    15123593
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    The GAIA software framework for genome annotation.

    Overton GC, Bailey C, Crabtree J, Gibson M, Fischer S, Schug J.

    Pac Symp Biocomput. 1998:291-302.

    PMID:
    9697190
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

    Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

    BMC Bioinformatics. 2006 Nov 23;7:513.

    PMID:
    17123449
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Development and evaluation of an automated annotation pipeline and cDNA annotation system.

    Kasukawa T, Furuno M, Nikaido I, Bono H, Hume DA, Bult C, Hill DP, Baldarelli R, Gough J, Kanapin A, Matsuda H, Schriml LM, Hayashizaki Y, Okazaki Y, Quackenbush J.

    Genome Res. 2003 Jun;13(6B):1542-51.

    PMID:
    12819153
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.

    Gaasterland T, Sczyrba A, Thomas E, Aytekin-Kurban G, Gordon P, Sensen CW.

    Genome Res. 2000 Apr;10(4):502-10.

    PMID:
    10779489
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

    Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

    Bioinformatics. 2005 Sep 15;21(18):3669-71. Epub 2005 Aug 2.

    PMID:
    16076887
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    GAMOLA: a new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes.

    Altermann E, Klaenhammer TR.

    OMICS. 2003 Summer;7(2):161-9.

    PMID:
    14506845
    [PubMed - indexed for MEDLINE]
    16.

    PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences.

    D'Ascenzo MD, Collmer A, Martin GB.

    Nucleic Acids Res. 2004 Jun 7;32(10):3124-35. Print 2004.

    PMID:
    15184545
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Annotation, comparison and databases for hundreds of bacterial genomes.

    Médigue C, Moszer I.

    Res Microbiol. 2007 Dec;158(10):724-36. Epub 2007 Oct 6. Review.

    PMID:
    18031997
    [PubMed - indexed for MEDLINE]
    18.

    An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases.

    Yang JO, Hwang S, Oh J, Bhak J, Sohn TK.

    BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S19.

    PMID:
    19091018
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Atlas - a data warehouse for integrative bioinformatics.

    Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

    BMC Bioinformatics. 2005 Feb 21;6:34.

    PMID:
    15723693
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    A new set of bioinformatics tools for genome projects.

    Almeida LG, Paixão R, Souza RC, Costa GC, Almeida DF, Vasconcelos AT.

    Genet Mol Res. 2004 Mar 31;3(1):26-52.

    PMID:
    15100986
    [PubMed - indexed for MEDLINE]
    Free Article

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